View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12642_low_9 (Length: 355)
Name: NF12642_low_9
Description: NF12642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12642_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 47535552 - 47535692
Alignment:
| Q |
18 |
atattcaacacttatacaagactcctatccttttaatttgaaatatacttcaacaattgaaaatagtaacaagtaaatgaccaacataaattaggagtgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47535552 |
atattcaacacttatacaagactcctatccttttaatttgaaatatacttcaacaattgaaaatagtaacaagtaaatgaccaacataaattaggagtgt |
47535651 |
T |
|
| Q |
118 |
tttaaggtttgttttnnnnnnnttatttatattatgtgatc |
158 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47535652 |
tttaaggtttgttttaaaaaaattatttatattatgtgatc |
47535692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 47535797 - 47535850
Alignment:
| Q |
276 |
aaccttaaatgcaattttggtccccttattttactaaattcgtaattttgatcc |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47535797 |
aaccttaaatgcaattttggtccccttattttactaaattcgtaattttgatcc |
47535850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University