View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12643_low_1 (Length: 379)
Name: NF12643_low_1
Description: NF12643
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12643_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 24630457 - 24630091
Alignment:
| Q |
1 |
atcgagtccttagagaaacaggatgaggtggacctctagaaaatcggtgacctcaaagttaaacagcagtcccttgaaggggagagaagaaattggagca |
100 |
Q |
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| T |
24630457 |
atcgagtccttggagaaacaggatgaggtggacctccagaaaatcggtgacctcaaagttaaacagcagtcccttgaaggggagagaagaaattggagca |
24630358 |
T |
|
| Q |
101 |
tgctttgaagtatgccactgcttgtggtgaagacgagcttgaagagctagccgcttcggatcgggctggtatggtggacataattgctcaactggaaaag |
200 |
Q |
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| T |
24630357 |
tgctttgaagtatgccactgcttgtggtgaagacgagcatgaagagctagccgcttcggatcgggctggtatggtggacataattgctcaactggaaaag |
24630258 |
T |
|
| Q |
201 |
ttcctagtggaaggtgctcgccatggattcaacaatggtgctgcccaagtgaaggtggtgaatcctagggttgagctagtgaccactaggaaacactact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24630257 |
ttcctagtggaaggtgctcgccatggattcaacaatggttttgcccaagtgaaggtggtgaatcctagggttgagctagtgaccactaggaaacactact |
24630158 |
T |
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| Q |
301 |
tgaagcatgtggaggtgggcgtgtttgtgactcctgaggacttcgaagaagatgagatagttgatga |
367 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
24630157 |
tgaagcatgtggaggtgagcgtgcttgtgactcctgaggacttcgaagaagatgagatggttaatga |
24630091 |
T |
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