View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12644_high_1_N (Length: 413)
Name: NF12644_high_1_N
Description: NF12644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12644_high_1_N |
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| [»] chr6 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 168 - 413
Target Start/End: Original strand, 1514550 - 1514775
Alignment:
| Q |
168 |
cacctgattacgacgtaaacttcatcaatgaattagtcacaaaccaataaattatttaagcattaaaccttgcacgtttaaatcaatcgaaatttataag |
267 |
Q |
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| T |
1514550 |
cacctgattacgacgtaaacttcatcaatgaattagtcacaaaccaataaattatttaagcattaaaccttgcacgtttaaatcaatcgaaatttataag |
1514649 |
T |
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| Q |
268 |
caaatgaggatacagtgagcagtgagcacgatagaacgagttgagatcctcttcgnnnnnnnatcttatccatttcttctacttgaaaagataacaacac |
367 |
Q |
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| T |
1514650 |
caaaggaggata-------cagtgagcacgatagaacgagttgagatcctcttcgtttttttaacttatccatttc-------------gataacaacat |
1514729 |
T |
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| Q |
368 |
aaaaaattttgaaaataattaatcatagtggaattcatttaataat |
413 |
Q |
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| T |
1514730 |
aaaaaattttgaaaataattaatcatagtggaattcatttaataat |
1514775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 1514382 - 1514484
Alignment:
| Q |
1 |
acatgagtacctacaaacgatacatatatcttttgacccgtatctgttcatctaaatctataaaagaaccattttctcatggagtatgttaaaagaaaga |
100 |
Q |
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| T |
1514382 |
acatgagtacctacaaacgatacatatatcttttgacccgtatctgttcatctaaatctataaaagaaccattttctcatggagtatgttaaaagaaaaa |
1514481 |
T |
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| Q |
101 |
acc |
103 |
Q |
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| T |
1514482 |
acc |
1514484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 363 - 410
Target Start/End: Complemental strand, 3512415 - 3512368
Alignment:
| Q |
363 |
aacacaaaaaattttgaaaataattaatcatagtggaattcatttaat |
410 |
Q |
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| T |
3512415 |
aacacaaaaaaatttaaaaataattaataatggtggaattcatttaat |
3512368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 413
Target Start/End: Complemental strand, 373287 - 373205
Alignment:
| Q |
331 |
tcttatccatttcttctacttgaaaagataacaacacaaaaaattttgaaaataattaatcatagtggaattcatttaataat |
413 |
Q |
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| T |
373287 |
tcttctccatttcttccatttagaaagataaagatacaaaaaatcttaaaaataattaataatggtgggattcatttaataat |
373205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 413
Target Start/End: Original strand, 35650275 - 35650352
Alignment:
| Q |
336 |
tccatttcttctacttgaaaagataacaacacaaaaaattttgaaaataattaatcatagtggaattcatttaataat |
413 |
Q |
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| T |
35650275 |
tccatttctttcatttgaagagatataaacataaaaaaatttaaaaataattaatgatggtgaaattcatttaataat |
35650352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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