View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12644_high_2 (Length: 408)
Name: NF12644_high_2
Description: NF12644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12644_high_2 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 55 - 386
Target Start/End: Complemental strand, 11662934 - 11662602
Alignment:
| Q |
55 |
cgccgaaaccgtttgtttctggtggtttctcacctcctcgagagctttctcaaagacctgctcctactcttttcgatactgatgataaagacattgaatt |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11662934 |
cgccgaaaccgtttgtttctggtggtttctcacctcctcgagagctttctcaaagacctgctcctactcttttcgatactcatgataaagacattgaatt |
11662835 |
T |
|
| Q |
155 |
tgagcgatttaaggtaattcttgaaatgggttttgattaatttgtgttttt-gttatatgggttttgttaaagttcttgcttatttgagaaaattggtca |
253 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11662834 |
tgagcgatttaaggtaattcttgaaatcggttttgattaatttgtgttttttgttatatgggttttgttaaagttcttgcttatttgggaaaattggtca |
11662735 |
T |
|
| Q |
254 |
tttttcattctctgttttatgctgttgtttgtctcaaataagaaaaattattattagtattagtgtttataaaggaaaagaaacagcatgattatgattt |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11662734 |
tttttcattctctgttttatgctgttgtttgtctcaaataagaaaaattattattagtattagtgtttataaaggaaaagaaacagcatgattatgattt |
11662635 |
T |
|
| Q |
354 |
ctttagttaagtcataaagatgttggcctagtg |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
11662634 |
ctttagttaagtcataaagatgttggcctagtg |
11662602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 100 - 235
Target Start/End: Complemental strand, 1015925 - 1015791
Alignment:
| Q |
100 |
tttctcaaagacctgctcctactcttttcgatactgatgataaagacattgaatttgagcgatttaaggtaattcttgaaatgggttttgattaatttgt |
199 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||||||||| |||||||| |||||| ||||||||| |||||||||||| |||||||| ||||||| |
|
|
| T |
1015925 |
tttctcaaagacctgctcctacccttttcagttatgatgataaaaacattgaaattgagcaatttaaggtgattcttgaaatgagttttgatgaatttgt |
1015826 |
T |
|
| Q |
200 |
gtttttgttatatgggttttgttaaagttcttgctt |
235 |
Q |
| |
|
| |||||||| ||||||||||| ||| || |||||| |
|
|
| T |
1015825 |
g-ttttgttagatgggttttgtcaaaattgttgctt |
1015791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 45113728 - 45113623
Alignment:
| Q |
99 |
ctttctcaaagacctgctcctactcttttcgatactgatgataaagacattgaatttgagcgatttaaggtaattcttgaaatgggttttgattaatttg |
198 |
Q |
| |
|
||||||||||||| ||||||||| |||||| | |||||||||| ||||||||||||||| ||||||| | ||| |||||||| |||||||| |||||| |
|
|
| T |
45113728 |
ctttctcaaagacttgctcctacccttttcaactatgatgataaaaacattgaatttgagcaatttaagttgattattgaaatgagttttgatgaatttg |
45113629 |
T |
|
| Q |
199 |
tgtttt |
204 |
Q |
| |
|
|||||| |
|
|
| T |
45113628 |
tgtttt |
45113623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 221
Target Start/End: Complemental strand, 11288349 - 11288240
Alignment:
| Q |
111 |
cctgctcctactcttttcgatactgatgataaagacattgaatttgagcgatttaaggtaattcttgaaatgggttttgattaatttgtgtttttgttat |
210 |
Q |
| |
|
||||||||||| |||||| | |||||||||| || |||||||||||| ||||| || ||| |||||||| |||| ||| |||||||| ||||||||| |
|
|
| T |
11288349 |
cctgctcctacccttttcaactatgatgataaaaacgttgaatttgagcactttaatgtgattattgaaatgagtttagatgaatttgtg-ttttgttat |
11288251 |
T |
|
| Q |
211 |
atgggttttgt |
221 |
Q |
| |
|
||||||||||| |
|
|
| T |
11288250 |
atgggttttgt |
11288240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 38116313 - 38116208
Alignment:
| Q |
99 |
ctttctcaaagacctgctcctactcttttcgatactgatgataaagacattgaatttgagcgatttaaggtaattcttgaaatgggttttgattaatttg |
198 |
Q |
| |
|
||||||||||||||||||||||| |||||| | |||||||||| ||||||||||||||| ||||||| | ||| |||||||| ||||||| |||||| |
|
|
| T |
38116313 |
ctttctcaaagacctgctcctacccttttcaactatgatgataaaaacattgaatttgagcaatttaagatgattattgaaatgagttttgaagaatttg |
38116214 |
T |
|
| Q |
199 |
tgtttt |
204 |
Q |
| |
|
|||||| |
|
|
| T |
38116213 |
tgtttt |
38116208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 22776157 - 22776063
Alignment:
| Q |
110 |
acctgctcctactcttttcgatactgatgataaagacattgaatttgagcgatttaaggtaattcttgaaatgggttttgattaatttgtgtttt |
204 |
Q |
| |
|
|||||||||||| |||||| || |||||||||| |||| |||||||||| ||||||||| ||||||||| |||||||||| |||||||||||| |
|
|
| T |
22776157 |
acctgctcctacccttttcaattatgatgataaaaacatggaatttgagcaatttaaggtgattcttgaaccgggttttgatgaatttgtgtttt |
22776063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 31566017 - 31566136
Alignment:
| Q |
80 |
tttctcacctcctcgagagctttctcaaagacctgctcctactcttttcgatactgatgataaagacattgaatttgagcgatttaaggtaattcttgaa |
179 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||| | ||||||||||| ||||||||||| |||||||| ||| ||||| |||||| |||| |
|
|
| T |
31566017 |
tttctcacctcctccagcgctttctcaaagacttgctgccactcttttcgac------gataaagacatcgaatttgatcgacttaagataattcctgaa |
31566110 |
T |
|
| Q |
180 |
atgggttttgattaatttgtgttttt |
205 |
Q |
| |
|
|| |||||| | ||||||||||||| |
|
|
| T |
31566111 |
ataggttttcacgaatttgtgttttt |
31566136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 375 - 408
Target Start/End: Complemental strand, 3835135 - 3835102
Alignment:
| Q |
375 |
gttggcctagtggtgcaggcttgggacttaggag |
408 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |
|
|
| T |
3835135 |
gttggcctagtggtgaaggcttgggacttaggag |
3835102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University