View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12644_high_3 (Length: 354)

Name: NF12644_high_3
Description: NF12644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12644_high_3
NF12644_high_3
[»] chr5 (5 HSPs)
chr5 (158-354)||(35431286-35431488)
chr5 (12-131)||(35431487-35431606)
chr5 (235-345)||(35379230-35379342)
chr5 (115-210)||(3261708-3261804)
chr5 (128-179)||(3344252-3344304)
[»] chr4 (4 HSPs)
chr4 (60-206)||(29057781-29057928)
chr4 (129-179)||(41805178-41805229)
chr4 (135-179)||(39600054-39600099)
chr4 (128-211)||(54628419-54628503)
[»] chr3 (1 HSPs)
chr3 (65-179)||(11354241-11354356)
[»] chr6 (1 HSPs)
chr6 (128-211)||(9880567-9880651)
[»] chr1 (5 HSPs)
chr1 (128-210)||(50900558-50900641)
chr1 (112-170)||(52282301-52282360)
chr1 (269-319)||(10418968-10419018)
chr1 (142-206)||(20290480-20290545)
chr1 (130-177)||(20291168-20291216)
[»] chr8 (2 HSPs)
chr8 (130-171)||(34020109-34020150)
chr8 (128-207)||(42327666-42327746)
[»] chr7 (3 HSPs)
chr7 (128-211)||(21516162-21516246)
chr7 (128-211)||(21516385-21516469)
chr7 (128-211)||(21516608-21516692)


Alignment Details
Target: chr5 (Bit Score: 166; Significance: 9e-89; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 158 - 354
Target Start/End: Complemental strand, 35431488 - 35431286
Alignment:
Q  158 ggggtgtttgtgtcatttaaaggtaactcaagggagatcagtgtaattttcccattatttagttgccaaattcttccatt-------tagttttctcaca 250  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       |||||||||||||    
T  35431488 ggggtgtttgtgtcatttaaagataactcaagggagat-agtgtaattttcccattatttagttgccaaattcttccattgttgcattagttttctcaca 35431390  T
Q  251 atgatacaattccatattttatgcaaacaattgcttgttcctttcacggaaataattgaaaagaaaatggtaatagttactctcccattaaataacatgt 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35431389 atgatacaattccatattttatgcaaacaattgcttgttcctttcacggaaataattgaaaagaaaatggtaatagttactctcccattaaataacatgt 35431290  T
Q  351 cata 354  Q
    ||||    
T  35431289 cata 35431286  T

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Target: chr5; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 12 - 131
Target Start/End: Complemental strand, 35431606 - 35431487
Alignment:
Q  12 ataggtttagtggacgaagattattatgaaacccaaaagtaggggatttactcttaacagaatagttaacggtgttaaattgaaagaggacgtgtttatc 111  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  35431606 ataggtttagtggacgaagattattatgaaacagaaaagtaggggatttactcttaacagaatagttaacggtgttaaattgaaaggggacgtgtttatc 35431507  T
Q  112 tttttaagagactttgaggg 131  Q
    |||||||||||||| |||||    
T  35431506 tttttaagagacttagaggg 35431487  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 235 - 345
Target Start/End: Complemental strand, 35379342 - 35379230
Alignment:
Q  235 atttagttttctcacaatgatacaattccatattttatgcaaacaattgcttgttcc-tttcacggaaataattgaaaagaaaatggtaatagttact-c 332  Q
    ||||| ||||| |||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |    
T  35379342 atttaattttcccacaatgatagaattccatactttatgcaaacaattgcttgttccttttcacggaaataattgaaaagaaaatggcaatagatactcc 35379243  T
Q  333 tcccattaaataa 345  Q
    | |||||||||||    
T  35379242 tgccattaaataa 35379230  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 210
Target Start/End: Complemental strand, 3261804 - 3261708
Alignment:
Q  115 ttaagagactttgagggaggtttgtgtctattataaaactaga-ggggtgtttgtgtcatttaaaggtaactcaagggagatcagtgtaattttccc 210  Q
    |||||||| ||| |||||||||| |||||||||||||| |||| |||| |||||||| ||||||| | |  |||||||||   ||||||||||||||    
T  3261804 ttaagagaatttaagggaggtttttgtctattataaaattagagggggagtttgtgttatttaaaagaacttcaagggaggctagtgtaattttccc 3261708  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 179
Target Start/End: Original strand, 3344252 - 3344304
Alignment:
Q  128 agggaggtttgtgtctattataaaactaga-ggggtgtttgtgtcatttaaag 179  Q
    |||||||||  |||||||||||||||||||  ||||||| |||||||||||||    
T  3344252 agggaggttaatgtctattataaaactagacagggtgttagtgtcatttaaag 3344304  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 60 - 206
Target Start/End: Complemental strand, 29057928 - 29057781
Alignment:
Q  60 tactcttaacagaatagttaacggtgttaaattgaaagaggacgtgtttatctttttaagagactttgagggaggtttgtgtctattataaaactag-ag 158  Q
    |||| |||||||||||  |||| ||||||||||||||| |||  ||||||||| ||||||||| |||||||||||| ||||| |||||||||||||| ||    
T  29057928 tacttttaacagaataactaaccgtgttaaattgaaaggggagatgtttatctatttaagagagtttgagggaggtgtgtgtgtattataaaactagaag 29057829  T
Q  159 gggtgtttgtgtcatttaaaggtaactcaagggagatcagtgtaattt 206  Q
    || ||||||||||||| ||||  | |||| ||||| ||||||||||||    
T  29057828 ggatgtttgtgtcattcaaagagacctcaggggaggtcagtgtaattt 29057781  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 41805229 - 41805178
Alignment:
Q  129 gggaggtttgtgtctattataaaactagagg-ggtgtttgtgtcatttaaag 179  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  41805229 gggaggtttatgtctattataaaactagaggaggtgtttgtgttatttaaag 41805178  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 39600054 - 39600099
Alignment:
Q  135 tttgtgtctattataaaactagagggg-tgtttgtgtcatttaaag 179  Q
    |||||||||| |||||||| ||||||| ||||||||||||||||||    
T  39600054 tttgtgtctaatataaaacgagagggggtgtttgtgtcatttaaag 39600099  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 54628503 - 54628419
Alignment:
Q  128 agggaggtttgtgtctattataaaactaga-ggggtgtttgtgtcatttaaaggtaactcaagggagatcagtgtaattttccca 211  Q
    ||||||||| ||||| ||| |||||||||| ||||||| | ||| ||||||||  |||| ||||||| | | |||||||||||||    
T  54628503 agggaggttagtgtcgattttaaaactagagggggtgtctttgtaatttaaagaaaacttaagggaggtgactgtaattttccca 54628419  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 65 - 179
Target Start/End: Original strand, 11354241 - 11354356
Alignment:
Q  65 ttaacagaatagttaacggtgttaaattgaaagaggacgtgtttatctttttaagagactttgagggaggtttgtgtctattataaaactaga-ggggtg 163  Q
    |||||||| || ||||| ||||||| ||||||| ||| || ||||||| ||||||||||||||||||| ||| ||||||||| |||||||| | ||||||    
T  11354241 ttaacagactatttaacagtgttaagttgaaaggggaggtatttatctatttaagagactttgagggaagttagtgtctattttaaaactaaagggggtg 11354340  T
Q  164 tttgtgtcatttaaag 179  Q
    ||||||||||| ||||    
T  11354341 tttgtgtcattcaaag 11354356  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 9880651 - 9880567
Alignment:
Q  128 agggaggtttgtgtctattataaaactagagggg-tgtttgtgtcatttaaaggtaactcaagggagatcagtgtaattttccca 211  Q
    ||||||||| ||||||||| |||||||||||||| ||| | ||| ||||||||  |||||||||||| | |||||||||||||||    
T  9880651 agggaggttggtgtctattttaaaactagagggggtgtctttgttatttaaagaaaactcaagggaggtgagtgtaattttccca 9880567  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 50900558 - 50900641
Alignment:
Q  128 agggaggtttgtgtctattataaaactagagggg-tgtttgtgtcatttaaaggtaactcaagggagatcagtgtaattttccc 210  Q
    ||||||||| || | |||| ||||| |||||||| |||||||| |||||||||  ||||||||||| || |||||| |||||||    
T  50900558 agggaggttagtatttattttaaaattagagggggtgtttgtgacatttaaagaaaactcaagggaaatgagtgtagttttccc 50900641  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 52282360 - 52282301
Alignment:
Q  112 tttttaagagactttgagggaggtttgtgtctattataaaactagag-gggtgtttgtgt 170  Q
    ||||||| ||||||| |||||||||  |||||||||||||||||||| || |||||||||    
T  52282360 tttttaaaagactttaagggaggttaatgtctattataaaactagagaggatgtttgtgt 52282301  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 10418968 - 10419018
Alignment:
Q  269 ttatgcaaacaattgcttgttcctttcacggaaataattgaaaagaaaatg 319  Q
    |||||||||||||| ||| |||| |||||||| ||||||||||||| ||||    
T  10418968 ttatgcaaacaatttcttcttccattcacggagataattgaaaagacaatg 10419018  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 20290545 - 20290480
Alignment:
Q  142 ctattataaaactagag-gggtgtttgtgtcatttaaaggtaactcaagggagatcagtgtaattt 206  Q
    ||||||||||||||||| |||||||||||| |||||| |  | |||| ||||| ||||||||||||    
T  20290545 ctattataaaactagagagggtgtttgtgttatttaaggaaacctcaggggaggtcagtgtaattt 20290480  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 177
Target Start/End: Complemental strand, 20291216 - 20291168
Alignment:
Q  130 ggaggtttgtgtctattataaaactaga-ggggtgtttgtgtcatttaa 177  Q
    |||||||  ||||||||||||||||||| ||||||||||||| ||||||    
T  20291216 ggaggttaatgtctattataaaactagagggggtgtttgtgttatttaa 20291168  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 34020109 - 34020150
Alignment:
Q  130 ggaggtttgtgtctattataaaactagaggggtgtttgtgtc 171  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||    
T  34020109 ggaggtttgtgtcaattttaaaactagaggggtgtttatgtc 34020150  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 207
Target Start/End: Original strand, 42327666 - 42327746
Alignment:
Q  128 agggaggtttgtgtctattataaaactaga-ggggtgtttgtgtcatttaaaggtaactcaagggagatcagtgtaatttt 207  Q
    ||||| ||| ||||||||| |||||||||| |||||||   | ||||||||||  |||||||||||| | |||||||||||    
T  42327666 agggatgttagtgtctattttaaaactagagggggtgtccctatcatttaaagaaaactcaagggaggtgagtgtaatttt 42327746  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 21516246 - 21516162
Alignment:
Q  128 agggaggtttgtgtctattataaaactagagg-ggtgtttgtgtcatttaaaggtaactcaagggagatcagtgtaattttccca 211  Q
    |||||| || |||| |||| |||||||||||| |||||||||  |||||||||  | |||||||||| | | |||||||||||||    
T  21516246 agggagattagtgtatattttaaaactagaggaggtgtttgttccatttaaagtgacctcaagggaggtaaatgtaattttccca 21516162  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 21516469 - 21516385
Alignment:
Q  128 agggaggtttgtgtctattataaaactagagg-ggtgtttgtgtcatttaaaggtaactcaagggagatcagtgtaattttccca 211  Q
    |||||| || |||| |||| |||||||||||| |||||||||  |||||||||  | |||||||||| | | |||||||||||||    
T  21516469 agggagattagtgtatattttaaaactagaggaggtgtttgttccatttaaagtgacctcaagggaggtaaatgtaattttccca 21516385  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 21516692 - 21516608
Alignment:
Q  128 agggaggtttgtgtctattataaaactagagg-ggtgtttgtgtcatttaaaggtaactcaagggagatcagtgtaattttccca 211  Q
    |||||| || |||| |||| |||||||||||| |||||||||  |||||||||  | |||||||||| | | |||||||||||||    
T  21516692 agggagattagtgtatattttaaaactagaggaggtgtttgttccatttaaagtgacctcaagggaggtaaatgtaattttccca 21516608  T

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