View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12644_high_5 (Length: 351)
Name: NF12644_high_5
Description: NF12644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12644_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 53 - 339
Target Start/End: Original strand, 28216528 - 28216823
Alignment:
| Q |
53 |
cttcaaatcctcaatttccatatccttttgctgcggattgcccattgagcgtatttatacttt-cttcaaatcctcaatttccatatcg---------ga |
142 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||| |||| |||||||||||||||||||||||| || |
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| T |
28216528 |
cttcaaatcctcaatttccatatccttc-gctgcggattgccccttgagcgtgtctattcttttcttcaaatcctcaatttccatatccttcgcggccga |
28216626 |
T |
|
| Q |
143 |
ttgccccttgagcatatctacacttttcttcaagccagcgacctcctcctcaaacaccttgttattttcattctttttgtccaactgagtcagagcagtc |
242 |
Q |
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|| |||||||||| |||||||||||||||||||||| | |||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
28216627 |
tttccccttgagcgcatctacacttttcttcaagccaacaacctcctcctcaaatgccttgttattttcagtctttttctccaactgagtcagagcagtc |
28216726 |
T |
|
| Q |
243 |
tgttcttcctccaatctcttatttaccttcaatatttgtttcttcatatctccaagaatatcattggctatttttaatttttctttggttgcattca |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28216727 |
tgttcttcctccaatctcttatttaccttcaatatttgtttcttcatatctccaagaatatcattggctattttcaatttttctttggttgcattca |
28216823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 53 - 339
Target Start/End: Original strand, 28237400 - 28237695
Alignment:
| Q |
53 |
cttcaaatcctcaatttccatatccttttgctgcggattgcccattgagcgtatttatacttt-cttcaaatcctcaatttccatatc---------gga |
142 |
Q |
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||||||||||||||||||||||||||| | || |||||||| |||||||||| | |||||| |||||||||||||||||||| ||| ||| |
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| T |
28237400 |
cttcaaatcctcaatttccatatccttg-gttgtggattgcctcttgagcgtatctgtacttttcttcaaatcctcaatttccacatccttcgaagcgga |
28237498 |
T |
|
| Q |
143 |
ttgccccttgagcatatctacacttttcttcaagccagcgacctcctcctcaaacaccttgttattttcattctttttgtccaactgagtcagagcagtc |
242 |
Q |
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| ||||||||||| ||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
28237499 |
tagccccttgagcgtatctacacttttcttcaagccaacaacctcctcctcaaacgccttgttattttcagtctttttctccaactgagtcagagcagtt |
28237598 |
T |
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| Q |
243 |
tgttcttcctccaatctcttatttaccttcaatatttgtttcttcatatctccaagaatatcattggctatttttaatttttctttggttgcattca |
339 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28237599 |
tgttcttcctccaatctcttatttaccttcaatatttgtttcttcatatctccaagaatatcattggctattttcaatttttctttggttgcattca |
28237695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 53 - 335
Target Start/End: Original strand, 28232571 - 28232862
Alignment:
| Q |
53 |
cttcaaatcctcaatttccatatccttttgctgcggattgcccattgagcgtatttatacttt-cttcaaatcctcaatttccatatc---------gga |
142 |
Q |
| |
|
|||||| ||||||||||||| |||||| || |||||| |||| |||||| ||| || ||||| |||||||||||||||||||| ||| ||| |
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| T |
28232571 |
cttcaagtcctcaatttccacatccttc-gcagcggatagccccttgagcatatctacacttttcttcaaatcctcaatttccacatccttcgcaatgga |
28232669 |
T |
|
| Q |
143 |
ttgccccttgagcatatctacacttttcttcaagccagcgacctcctcctcaaacaccttgttattttcattctttttgtccaactgagtcagagcagtc |
242 |
Q |
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| ||||||| ||||||||||||||||||||||||||| | |||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28232670 |
tagcccctttagcatatctacacttttcttcaagccaacctcctcctcctcaaacgctttgttattttcattctttttctccaactgagtcagagcagtc |
28232769 |
T |
|
| Q |
243 |
tgttcttcctccaatctcttatttaccttcaatatttgtttcttcatatctccaagaatatcattggctatttttaatttttctttggttgca |
335 |
Q |
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||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| |||||||||||||||| |||||| ||||||||||| |
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| T |
28232770 |
tgttcttcctccaatctcttatttaccttcaatatgtgcttcttcatatccccaagagtatcattggctattttcaattttcctttggttgca |
28232862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 28216413 - 28216551
Alignment:
| Q |
1 |
cttgttctatggccttatcaaaaccatctttatagcgaaaggcagtatctaacttcaaatcctcaatttccatatccttttgctgcggattgcccattga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28216413 |
cttgttctatggccttatcaaaaccatcttgatagcgaaaggcagtatctaacttcaaatcctcaatttccatatcc-tttgctgcggattgcccattga |
28216511 |
T |
|
| Q |
101 |
gcgtatttatac-tttcttcaaatcctcaatttccatatc |
139 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| |
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| T |
28216512 |
gcgtatttatacttttcttcaaatcctcaatttccatatc |
28216551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 28232393 - 28232577
Alignment:
| Q |
1 |
cttgttctatggccttatcaaaaccatctttatagcgaaaggcagtatctaacttcaaatcctcaatttccatatccttttgctgcggattgcccattga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
28232393 |
cttgttctatggccttatcaaaaccatcttgatagcgcaaggcagcgtctaccttcaaatcctcaatttccatatcc-tttgctgcggattgccccttga |
28232491 |
T |
|
| Q |
101 |
gcgtatttatac-tttcttcaaatcctcaatttccatat---------cggattgccccttgagcatatctacacttttcttcaag |
176 |
Q |
| |
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||||| |||| ||||||||| ||||||||||| |||| |||||| ||||||||||||||||||||||| ||||||| |
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| T |
28232492 |
acgtatccatacttttcttcaattcctcaatttctatatccttcgctgcggatttccccttgagcatatctacactttccttcaag |
28232577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 28237285 - 28237423
Alignment:
| Q |
1 |
cttgttctatggccttatcaaaaccatctttatagcgaaaggcagtatctaacttcaaatcctcaatttccatatccttttgctgcggattgcccattga |
100 |
Q |
| |
|
|||||||||||||||| ||||||||| ||| ||||||||| |||| |||| |||||| |||||||||||||||||||||| ||||||||||||| |||| |
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| T |
28237285 |
cttgttctatggccttgtcaaaaccaccttgatagcgaaatgcagcgtctatcttcaactcctcaatttccatatcctttt-ctgcggattgccccttga |
28237383 |
T |
|
| Q |
101 |
gcgtatttatac-tttcttcaaatcctcaatttccatatc |
139 |
Q |
| |
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|||||| ||| | ||||||||||||||||||||||||||| |
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| T |
28237384 |
gcgtatctatgcttttcttcaaatcctcaatttccatatc |
28237423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 175
Target Start/End: Original strand, 28232508 - 28232639
Alignment:
| Q |
53 |
cttcaaatcctcaatttccatatccttttgctgcggattgcccattgagcgtatttatacttt-cttcaaatcctcaatttccatat---------cgga |
142 |
Q |
| |
|
|||||| ||||||||||| |||||| || |||||||||| ||| |||||| ||| || ||||| |||||| ||||||||||||| || |||| |
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| T |
28232508 |
cttcaattcctcaatttctatatcc-ttcgctgcggatttccccttgagcatatctacactttccttcaagtcctcaatttccacatccttcgcagcgga |
28232606 |
T |
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| Q |
143 |
ttgccccttgagcatatctacacttttcttcaa |
175 |
Q |
| |
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| ||||||||||||||||||||||||||||||| |
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| T |
28232607 |
tagccccttgagcatatctacacttttcttcaa |
28232639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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