View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12644_low_1 (Length: 605)
Name: NF12644_low_1
Description: NF12644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12644_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 15 - 565
Target Start/End: Complemental strand, 11663156 - 11662602
Alignment:
| Q |
15 |
aaggtcgacgaagaacatcgatgatgatgaacgacaacaaca---tcaacatcaccgatgatatcttaggcgatgaatgggacgaagatttcctcaacag |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11663156 |
aaggtcgacgaagaacatcgatgatgatgaacaacaacaacaacatcaacatcaccgatgatatcttaggcgatgaatgggacgaagatttcctcaacag |
11663057 |
T |
|
| Q |
112 |
cgttattgaagctgaaaccgatgctatctcttccagtttcaaacccaaccctacaaacccttcttcttctcccacttctttctctaaccatcatcaattc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
11663056 |
cgttattgaagctgaaaccgatgctatctcttccagtttcaaaccccaccctacaaacccttcttcttcttccacttctttctctaaccatcatcaattc |
11662957 |
T |
|
| Q |
212 |
nnnnnnnnnnnnnnnnnnnnnncgccgaaaccgtttgtttctggtggtttctcacctcctcgagagctttctcaaagacctgctcctactcttttcgata |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11662956 |
caacaacaacaacaacaacaaccgccgaaaccgtttgtttctggtggtttctcacctcctcgagagctttctcaaagacctgctcctactcttttcgata |
11662857 |
T |
|
| Q |
312 |
ctgatgataaagacattgaatttgagcgatttaaggtaattcttgaaatgggttttgattaatttgtgttttt-gttatatgggttttgttaaagttctt |
410 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11662856 |
ctcatgataaagacattgaatttgagcgatttaaggtaattcttgaaatcggttttgattaatttgtgttttttgttatatgggttttgttaaagttctt |
11662757 |
T |
|
| Q |
411 |
gcttatttgagaaaattggtcatttttcattctctgttttatgctgttgtttgtctcaaataagaaaaattattattagtattagtgtttataaaggaaa |
510 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11662756 |
gcttatttgggaaaattggtcatttttcattctctgttttatgctgttgtttgtctcaaataagaaaaattattattagtattagtgtttataaaggaaa |
11662657 |
T |
|
| Q |
511 |
agaaacagcatgattatgatttctttagttaagtcataaagatgttggcctagtg |
565 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11662656 |
agaaacagcatgattatgatttctttagttaagtcataaagatgttggcctagtg |
11662602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 279 - 414
Target Start/End: Complemental strand, 1015925 - 1015791
Alignment:
| Q |
279 |
tttctcaaagacctgctcctactcttttcgatactgatgataaagacattgaatttgagcgatttaaggtaattcttgaaatgggttttgattaatttgt |
378 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||||||||| |||||||| |||||| ||||||||| |||||||||||| |||||||| ||||||| |
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|
| T |
1015925 |
tttctcaaagacctgctcctacccttttcagttatgatgataaaaacattgaaattgagcaatttaaggtgattcttgaaatgagttttgatgaatttgt |
1015826 |
T |
|
| Q |
379 |
gtttttgttatatgggttttgttaaagttcttgctt |
414 |
Q |
| |
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| |||||||| ||||||||||| ||| || |||||| |
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|
| T |
1015825 |
g-ttttgttagatgggttttgtcaaaattgttgctt |
1015791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 278 - 383
Target Start/End: Complemental strand, 45113728 - 45113623
Alignment:
| Q |
278 |
ctttctcaaagacctgctcctactcttttcgatactgatgataaagacattgaatttgagcgatttaaggtaattcttgaaatgggttttgattaatttg |
377 |
Q |
| |
|
||||||||||||| ||||||||| |||||| | |||||||||| ||||||||||||||| ||||||| | ||| |||||||| |||||||| |||||| |
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| T |
45113728 |
ctttctcaaagacttgctcctacccttttcaactatgatgataaaaacattgaatttgagcaatttaagttgattattgaaatgagttttgatgaatttg |
45113629 |
T |
|
| Q |
378 |
tgtttt |
383 |
Q |
| |
|
|||||| |
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|
| T |
45113628 |
tgtttt |
45113623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 400
Target Start/End: Complemental strand, 11288349 - 11288240
Alignment:
| Q |
290 |
cctgctcctactcttttcgatactgatgataaagacattgaatttgagcgatttaaggtaattcttgaaatgggttttgattaatttgtgtttttgttat |
389 |
Q |
| |
|
||||||||||| |||||| | |||||||||| || |||||||||||| ||||| || ||| |||||||| |||| ||| |||||||| ||||||||| |
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|
| T |
11288349 |
cctgctcctacccttttcaactatgatgataaaaacgttgaatttgagcactttaatgtgattattgaaatgagtttagatgaatttgtg-ttttgttat |
11288251 |
T |
|
| Q |
390 |
atgggttttgt |
400 |
Q |
| |
|
||||||||||| |
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|
| T |
11288250 |
atgggttttgt |
11288240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 278 - 383
Target Start/End: Complemental strand, 38116313 - 38116208
Alignment:
| Q |
278 |
ctttctcaaagacctgctcctactcttttcgatactgatgataaagacattgaatttgagcgatttaaggtaattcttgaaatgggttttgattaatttg |
377 |
Q |
| |
|
||||||||||||||||||||||| |||||| | |||||||||| ||||||||||||||| ||||||| | ||| |||||||| ||||||| |||||| |
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|
| T |
38116313 |
ctttctcaaagacctgctcctacccttttcaactatgatgataaaaacattgaatttgagcaatttaagatgattattgaaatgagttttgaagaatttg |
38116214 |
T |
|
| Q |
378 |
tgtttt |
383 |
Q |
| |
|
|||||| |
|
|
| T |
38116213 |
tgtttt |
38116208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 289 - 383
Target Start/End: Complemental strand, 22776157 - 22776063
Alignment:
| Q |
289 |
acctgctcctactcttttcgatactgatgataaagacattgaatttgagcgatttaaggtaattcttgaaatgggttttgattaatttgtgtttt |
383 |
Q |
| |
|
|||||||||||| |||||| || |||||||||| |||| |||||||||| ||||||||| ||||||||| |||||||||| |||||||||||| |
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|
| T |
22776157 |
acctgctcctacccttttcaattatgatgataaaaacatggaatttgagcaatttaaggtgattcttgaaccgggttttgatgaatttgtgtttt |
22776063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 259 - 384
Target Start/End: Original strand, 31566017 - 31566136
Alignment:
| Q |
259 |
tttctcacctcctcgagagctttctcaaagacctgctcctactcttttcgatactgatgataaagacattgaatttgagcgatttaaggtaattcttgaa |
358 |
Q |
| |
|
|||||||||||||| || |||||||||||||| |||| | ||||||||||| ||||||||||| |||||||| ||| ||||| |||||| |||| |
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|
| T |
31566017 |
tttctcacctcctccagcgctttctcaaagacttgctgccactcttttcgac------gataaagacatcgaatttgatcgacttaagataattcctgaa |
31566110 |
T |
|
| Q |
359 |
atgggttttgattaatttgtgttttt |
384 |
Q |
| |
|
|| |||||| | ||||||||||||| |
|
|
| T |
31566111 |
ataggttttcacgaatttgtgttttt |
31566136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 554 - 589
Target Start/End: Complemental strand, 3835135 - 3835100
Alignment:
| Q |
554 |
gttggcctagtggtgcaggcttgggacttaggagtg |
589 |
Q |
| |
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||||||||||||||| |||||||||||||||||||| |
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|
| T |
3835135 |
gttggcctagtggtgaaggcttgggacttaggagtg |
3835100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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