View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12644_low_2 (Length: 252)
Name: NF12644_low_2
Description: NF12644
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12644_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 28216812 - 28216556
Alignment:
| Q |
1 |
aaagaaaaattaaaaatagccaatgatattcttggagatatgaagaaacaaatattgaaggtaaataagagattggaggaagaacagactgctctgactc |
100 |
Q |
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| T |
28216812 |
aaagaaaaattgaaaatagccaatgatattcttggagatatgaagaaacaaatattgaaggtaaataagagattggaggaagaacagactgctctgactc |
28216713 |
T |
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| Q |
101 |
agttggacaaaaagaatgaaaataacaaggtgtttgaggaggaggttgctggcttgaagaaaagtgtagatatgctcaaggggcaatc---------cga |
191 |
Q |
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| T |
28216712 |
agttggagaaaaagactgaaaataacaaggcatttgaggaggaggttgttggcttgaagaaaagtgtagatgcgctcaaggggaaatcggccgcgaagga |
28216613 |
T |
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| Q |
192 |
tatggaaattgaggatttgaag-aaagtataaatacgctcaatgggcaatccgcagc |
247 |
Q |
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| T |
28216612 |
tatggaaattgaggatttgaagaaaagaatagacacgctcaaggggcaatccgcagc |
28216556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 28237684 - 28237433
Alignment:
| Q |
1 |
aaagaaaaattaaaaatagccaatgatattcttggagatatgaagaaacaaatattgaaggtaaataagagattggaggaagaacagactgctctgactc |
100 |
Q |
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| T |
28237684 |
aaagaaaaattgaaaatagccaatgatattcttggagatatgaagaaacaaatattgaaggtaaataagagattggaggaagaacaaactgctctgactc |
28237585 |
T |
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| Q |
101 |
agttggacaaaaagaatgaaaataacaaggtgtttgaggaggaggttgctggcttgaagaaaagtgtagatatgctcaaggggcaatcc---------ga |
191 |
Q |
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| T |
28237584 |
agttggagaaaaagactgaaaataacaaggcgtttgaggaggaggttgttggcttgaagaaaagtgtagatacgctcaaggggctatccgcttcgaagga |
28237485 |
T |
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| Q |
192 |
tatggaaattgaggatttgaag-aaagtataaatacgctcaatgggcaatcc |
242 |
Q |
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| T |
28237484 |
tgtggaaattgaggatttgaagaaaagtacagatacgctcaagaggcaatcc |
28237433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 28232855 - 28232602
Alignment:
| Q |
1 |
aaagaaaaattaaaaatagccaatgatattcttggagatatgaagaaacaaatattgaaggtaaataagagattggaggaagaacagactgctctgactc |
100 |
Q |
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|||| |||||| |||||||||||||||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28232855 |
aaaggaaaattgaaaatagccaatgatactcttggggatatgaagaagcacatattgaaggtaaataagagattggaggaagaacagactgctctgactc |
28232756 |
T |
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| Q |
101 |
agttggacaaaaagaatgaaaataacaaggtgtttgaggaggaggttgctggcttgaagaaaagtgtagatatgctcaaggggcaatcc---------ga |
191 |
Q |
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| T |
28232755 |
agttggagaaaaagaatgaaaataacaaagcgtttgaggaggaggaggttggcttgaagaaaagtgtagatatgctaaaggggctatccattgcgaagga |
28232656 |
T |
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| Q |
192 |
tatggaaattgaggatttgaag-aaagtataaatacgctcaatgggcaatccgc |
244 |
Q |
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| T |
28232655 |
tgtggaaattgaggatttgaagaaaagtgtagatatgctcaaggggctatccgc |
28232602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 28216551 - 28216490
Alignment:
| Q |
190 |
gatatggaaattgaggatttgaagaaa-gtataaatacgctcaatgggcaatccgcagcaaa |
250 |
Q |
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| T |
28216551 |
gatatggaaattgaggatttgaagaaaagtataaatacgctcaatgggcaatccgcagcaaa |
28216490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 28237423 - 28237366
Alignment:
| Q |
190 |
gatatggaaattgaggatttgaag-aaagtataaatacgctcaatgggcaatccgcag |
246 |
Q |
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| T |
28237423 |
gatatggaaattgaggatttgaagaaaagcatagatacgctcaaggggcaatccgcag |
28237366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 28232577 - 28232470
Alignment:
| Q |
153 |
cttgaagaaaagtgtagatatgctcaaggggcaatccg---------atatggaaattgaggatttgaagaaa-gtataaatacgctcaatgggcaatcc |
242 |
Q |
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| T |
28232577 |
cttgaaggaaagtgtagatatgctcaaggggaaatccgcagcgaaggatatagaaattgaggaattgaagaaaagtatggatacgttcaaggggcaatcc |
28232478 |
T |
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| Q |
243 |
gcagcaaa |
250 |
Q |
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| T |
28232477 |
gcagcaaa |
28232470 |
T |
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