View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12646_high_2 (Length: 409)
Name: NF12646_high_2
Description: NF12646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12646_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 26281866 - 26281484
Alignment:
| Q |
17 |
agaaaacactctctcatcatcttcatccgtcaccgcatcccccgcttcaccgtcacattccacatcggagccgatcgttcaattcatcaatccaatggtt |
116 |
Q |
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| T |
26281866 |
agaaaacactctctcatcatcttcatccgtcaccgcatcccccgcttcaccgtcacattccacatcggagccgatcgttcaattcatcaatccaatggtt |
26281767 |
T |
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| Q |
117 |
acgtcaagtgttgtaattaccaattctgtttcttttttggttcaaccgaaccagtgctttacctgtagaaagcgcgtggggctgaccgggtttaagtgta |
216 |
Q |
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| T |
26281766 |
acgtcaagtgttgtaattaccaattctgtttcttttttggttcaatcgaaccggtgctttacctgtagaaagcgcgtggggctgaccgggtttaagtgta |
26281667 |
T |
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| Q |
217 |
gatgtgggtccacgttttgtgggtcccacaggtacccggagagacatggttgtggatttgattttaagacggtggggagaaaggaaatagctcaagcaaa |
316 |
Q |
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| T |
26281666 |
gatgtgggtccacgttttgtgggtcccacaggtacccggagagacatggttgtggatttgattttaagatggtggggagaaaggaaatagctcaagcaaa |
26281567 |
T |
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| Q |
317 |
tcctttgattaaagcggagaagttgaggaggatttgattcaatcttaatcgttcgtttatggtatgagatgtgggggcctttg |
399 |
Q |
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| T |
26281566 |
tcctttgattaaagcggaaaagttgaggaggatttgattcaatcttaatcgttcgtttatggtatgagatgtgggggcctttg |
26281484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 189 - 284
Target Start/End: Complemental strand, 19377875 - 19377780
Alignment:
| Q |
189 |
cgcgtggggctgaccgggtttaagtgtagatgtgggtccacgttttgtgggtcccacaggtacccggagagacatggttgtggatttgattttaag |
284 |
Q |
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| T |
19377875 |
cgcgtggggctgacaggatttaagtgtcgatgtggattgacgttgtgtgggacccacaggtatccggagcagcatggttgtggatttgattttaag |
19377780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 331
Target Start/End: Original strand, 42269995 - 42270125
Alignment:
| Q |
201 |
accgggtttaagtgtagatgtgggtccacgttttgtgggtcccacaggtacccggagagacatggttgtggatttgattttaagacggtggggagaaagg |
300 |
Q |
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| T |
42269995 |
accgggttcaagtgtagatgtggaattacattttgtgggtcccacaggtatccggagaaacatgagtgcggttttgatttcaaagcggtggggagagagg |
42270094 |
T |
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| Q |
301 |
aaatagctcaagcaaatcctttgattaaagc |
331 |
Q |
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| T |
42270095 |
agatagcgaaagcgaatcctgtgatcaaagc |
42270125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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