View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12646_high_3 (Length: 409)
Name: NF12646_high_3
Description: NF12646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12646_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 11 - 393
Target Start/End: Original strand, 7842072 - 7842467
Alignment:
| Q |
11 |
cataggtttcagtcactttttctgttggcattctgatgttttcagcacctccaattcgattataagactccgatgttttttcccttccgtatgacatggc |
110 |
Q |
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| T |
7842072 |
cataggtttcagtcactttttctgttggcattctgatgttttcatcacctccaattcgattataagactccgatgttttttcccttccgtatgaaatggc |
7842171 |
T |
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| Q |
111 |
tcctgaaattgcttccttggtatctctagccttctgcaaagcatactcagaagctcctatacatacaaacaaattaaagcaattgcattacttgagttag |
210 |
Q |
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| T |
7842172 |
tcctgaaattgcttccttggtatctctagccttctgcgaagcatactcagaagctcctatacatacaaacaaattaaagcaattgcattacttgagttag |
7842271 |
T |
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| Q |
211 |
atacaaaatcattctctaaatgannnnnnncttctctaatgcatgagagcaagtgaaagaaacttttt-------ct-------aaataggcttgaagtg |
296 |
Q |
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| T |
7842272 |
atacaaaatcattctctaaatgatttttttcttctctaatgcatgagagcaagtgaaagaaacttttttcggttactttcaaaaaaataggcttgaagtg |
7842371 |
T |
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| Q |
297 |
agtgttgaatacacttcaaaattttctaaagtatcctaaagggggttcatccttcttcccacttgcatccaatattcatagattggtagggagaatt |
393 |
Q |
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| T |
7842372 |
agtgttgaatacacttcaaaa-tttcttaagcatcctaaaggggattcatccttcttcccacttgcatccaatattcatagattggtagggagaatt |
7842467 |
T |
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