View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12646_high_6 (Length: 229)

Name: NF12646_high_6
Description: NF12646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12646_high_6
NF12646_high_6
[»] chr1 (1 HSPs)
chr1 (93-215)||(6852869-6852991)
[»] chr8 (2 HSPs)
chr8 (147-178)||(37152046-37152077)
chr8 (148-176)||(44114117-44114145)
[»] chr3 (1 HSPs)
chr3 (146-176)||(24277996-24278026)
[»] chr6 (1 HSPs)
chr6 (146-179)||(26178402-26178435)
[»] chr5 (1 HSPs)
chr5 (146-179)||(19177172-19177205)
[»] chr4 (1 HSPs)
chr4 (148-176)||(50016964-50016992)


Alignment Details
Target: chr1 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 6852991 - 6852869
Alignment:
Q  93 gaatctaaccaagcacaagatatctaacaacattaagggtctgattaggaggagttttggagggctaagtctatattttgatattttagaaaaagtttaa 192  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6852991 gaatctaaccaaacacaagatatctaacaacattaagggtctgattcggaggagttttggagcgctaagtctatattttgatattttagaaaaagtttaa 6852892  T
Q  193 atatgattttagtccatgttagt 215  Q
    ||||||||||||||| |||||||    
T  6852891 atatgattttagtccctgttagt 6852869  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 178
Target Start/End: Complemental strand, 37152077 - 37152046
Alignment:
Q  147 ttttggagggctaagtctatattttgatattt 178  Q
    ||||||||||||||||||||||||||||||||    
T  37152077 ttttggagggctaagtctatattttgatattt 37152046  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 176
Target Start/End: Original strand, 44114117 - 44114145
Alignment:
Q  148 tttggagggctaagtctatattttgatat 176  Q
    |||||||||||||||||||||||||||||    
T  44114117 tttggagggctaagtctatattttgatat 44114145  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 176
Target Start/End: Original strand, 24277996 - 24278026
Alignment:
Q  146 gttttggagggctaagtctatattttgatat 176  Q
    |||||||||||||||||||||||||||||||    
T  24277996 gttttggagggctaagtctatattttgatat 24278026  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 26178402 - 26178435
Alignment:
Q  146 gttttggagggctaagtctatattttgatatttt 179  Q
    ||||||||||||||||| ||||||||||||||||    
T  26178402 gttttggagggctaagtttatattttgatatttt 26178435  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 19177172 - 19177205
Alignment:
Q  146 gttttggagggctaagtctatattttgatatttt 179  Q
    ||||||||||||||||||||||| ||||||||||    
T  19177172 gttttggagggctaagtctatatgttgatatttt 19177205  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 176
Target Start/End: Original strand, 50016964 - 50016992
Alignment:
Q  148 tttggagggctaagtctatattttgatat 176  Q
    |||||||||||||||||||||||||||||    
T  50016964 tttggagggctaagtctatattttgatat 50016992  T

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