View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12646_low_4 (Length: 328)
Name: NF12646_low_4
Description: NF12646
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12646_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 43116306 - 43116018
Alignment:
| Q |
18 |
atatgtgacgagcctaccaaaaattgctaatctaggcacgatcatttgatctaggtcctaattgtggaattggattcccttaacacaattaaagcaattg |
117 |
Q |
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| T |
43116306 |
atatgtgacgagcctaccaaaaattgctaatctaggcacgatcaattgatctaggtcctaattgtggaattggactcccttaacacaattaaagcaattg |
43116207 |
T |
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| Q |
118 |
cagaccaatggcaaaatcactcctctttaggtctctttaggtctcatagtagaggattgtgtcaatttaatttacaattttcttatattagacgtgttgc |
217 |
Q |
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| T |
43116206 |
cagaccaatggcaaaatcactcctctttagatctc----------atagtagaggattgtgtcaatttaatttacaattttcttatattagacgtgttgc |
43116117 |
T |
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| Q |
218 |
taatcaagtcgcacaatggggtgaaagcacatgttttcaatcaatttaagttaacatgtgctaggaaatatgtattaaaaattatacttactctgtctc |
316 |
Q |
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| T |
43116116 |
taatcaagtcgcacaatggggtgaaagcacatgttttcaatcaatttaagttaacatgtgctaggaaatatgtattaaaaattatacttactctgtctc |
43116018 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 7239794 - 7239852
Alignment:
| Q |
91 |
attcccttaacacaattaaagcaattgcagaccaatggcaaaatcactcctctttaggt |
149 |
Q |
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| T |
7239794 |
attcccttaacacaattaaaacaattgcagaccagcagtaaaatcactcctatttaggt |
7239852 |
T |
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