View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12647_low_1 (Length: 438)
Name: NF12647_low_1
Description: NF12647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12647_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 422
Target Start/End: Complemental strand, 1248654 - 1248250
Alignment:
| Q |
19 |
aaggaggggaagaggatgagggacatggatggatttctctccatttttgtggtgtaatggtttttgatgtaggaagttgaaataaatgaagggtacttat |
118 |
Q |
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| T |
1248654 |
aaggaggggaagaggatgagggacatggatggatttctctccatttttgtggagtaatggtttttgatgtaggaagttgaaataaatgaagggtacttat |
1248555 |
T |
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| Q |
119 |
agggtccaaaactcctttataatgagtaccttgcatgtttatttccgaaaaagtttgattatttttggaattttattactttaacaacaatgtaaaaatc |
218 |
Q |
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| T |
1248554 |
agggtccaaaactcctttataatgagtaccttgcatgtttatttccgaaaaagtttgattatttttggaattttattactttaacaacaaagtaaaaatc |
1248455 |
T |
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| Q |
219 |
ttcatcaagatcacaaataatgtattggtccaagatcatgtaataatttctttctggttggggtc-nnnnnnnggaatatgacaccgaaacttttttata |
317 |
Q |
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| T |
1248454 |
ttcatcaagatcacaaataatgtattggtccaagatcatgtaataatttctttctggttggggtcttttttttggaatatgacaccgaaacttttttata |
1248355 |
T |
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| Q |
318 |
tgtatagagattgtgtccatataaaccagtaaaataataattttgttgcattattcatttgaaataagcaagtttcacacatgtgagcagggagctatgt |
417 |
Q |
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| T |
1248354 |
tgtatagagattgtgtccatataaaccagtaaaataataattttgttgcattattcatttgaaataagcaagtttcacacatgtgagcagggagctatgt |
1248255 |
T |
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| Q |
418 |
gatgt |
422 |
Q |
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| T |
1248254 |
gatgt |
1248250 |
T |
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