View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12647_low_3 (Length: 382)
Name: NF12647_low_3
Description: NF12647
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12647_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 25 - 374
Target Start/End: Original strand, 38406865 - 38407215
Alignment:
| Q |
25 |
aacgtttaatttagaaatggagagagtgggagatctatgatgagttggagatatccaaaatcatggtgtctgaaacgaagagaaaaggtaggccgtataa |
124 |
Q |
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| T |
38406865 |
aacgtttaatttagaaatggagagagtgggagatctatgatgagttggagatatccaaaatcatggtgtctgaaacgaagagaaaaggtaggccgtataa |
38406964 |
T |
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| Q |
125 |
atgaaatttattaagaatctactaaacggt--attcatgcattggttttgctgttataatagcctactgtgttgcttgtagaaactttattgcagannnn |
222 |
Q |
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| T |
38406965 |
atgaaatttattaagaatctactaaacggtacattcatgcattggttttgctgttatcatagcttactgtgctgcttgtagaaactttattgcaga-ttt |
38407063 |
T |
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| Q |
223 |
nnnnacaggagatttcgttgcagctgtattgcacggtttgtgatagtttttgtggctagagagtatatatagtttgtgctgtgtaggcttggtaacacag |
322 |
Q |
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| T |
38407064 |
ttatacaggagatttcgttgcaactgtattgcacggtttgtgatagtttttgtggctagagagtatatatagtttgtgctgtgtaggcttggtaacacag |
38407163 |
T |
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| Q |
323 |
aattttgccattttgcattgttcgagtgcagtttgcgttatcatcctatgct |
374 |
Q |
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| T |
38407164 |
aattttgccattttgcattgttcgagtgcagtttgcgttatcatcctatgct |
38407215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 34 - 145
Target Start/End: Original strand, 38428635 - 38428746
Alignment:
| Q |
34 |
tttagaaatggagagagtgggagatctatgatgagttggagatatccaaaatcatggtgtctgaaacgaagagaaaaggtaggccgtataaatgaaattt |
133 |
Q |
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| T |
38428635 |
tttagatatggagagagtaggatatttatgatgagtaaaagatatccaaaaccatggtgtatgaaccgaagagaaaagctaggccagtttaatgaaattt |
38428734 |
T |
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| Q |
134 |
attaagaatcta |
145 |
Q |
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| T |
38428735 |
aatgagaatcta |
38428746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 28316679 - 28316778
Alignment:
| Q |
35 |
ttagaaatggagagagtgggagatctatgatgagttggagatatccaaaatcatggtgtctgaaacgaagagaaaaggtaggccgtataaatgaaattta |
134 |
Q |
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| T |
28316679 |
ttagatatggagacattgggagatttatgatgagttggagatatcc-aaaccatggtgtatgaatcgaagagaagaggta-gccagataaatgaaagtta |
28316776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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