View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12648_low_1 (Length: 490)
Name: NF12648_low_1
Description: NF12648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12648_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 122 - 488
Target Start/End: Original strand, 35356841 - 35357206
Alignment:
| Q |
122 |
cacttgagtatggttaatgccatccactgccattttagaatccaattcaaagatgacattatgcaattgtagttcatgtatccagatcattgcatgccaa |
221 |
Q |
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| T |
35356841 |
cacttgagtatggttaatgccatccactgccattttagaatccaattcaaagatgacatcatgcaattgtagttcatgtatccagatcattgcatgccaa |
35356940 |
T |
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| Q |
222 |
agacccaaggcttcacctttatgaacatcaaaagcttggtatagtttattgttattgcttggataaactttcgatgctcattccagatgcatataccaaa |
321 |
Q |
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| T |
35356941 |
agacccaaggcttcacctttatgaacatcaaaagcttggtatagtttattgttattgcttggataaactttcgatgctcattccagatgcatataccaaa |
35357040 |
T |
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| Q |
322 |
gatatgtttcattttatccaaacagctctcggattctgccaaattacagcagctgtttgctgtctgcctgtgtcaaatctactgtcaccgtgcgcagttg |
421 |
Q |
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| T |
35357041 |
gatatgtttcattttatccaaacagctctcggattctgccaaattacagcagctgtttgctgtctgcctgtgtcaaatctactgtcaccgtgcgcagttg |
35357140 |
T |
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| Q |
422 |
ttctagccatgttccagcttgccaagtctgcttgtgctcgggccaaaatctggtctgtgctgctcct |
488 |
Q |
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| T |
35357141 |
ttctagccatgttccagcttgccaagtctgcttgtgctcgggccaaaatctggtctg-gctgctcct |
35357206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 35356731 - 35356799
Alignment:
| Q |
45 |
atgagcaactccattgggttgcctctttagatacacaacattaatatgttgaaaaaagaagatatgtta |
113 |
Q |
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| T |
35356731 |
atgagcaactccattgggttgcctctttagatacacaacattaatatgttgaaaaaagaagatatgtta |
35356799 |
T |
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