View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12648_low_2 (Length: 354)
Name: NF12648_low_2
Description: NF12648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12648_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 354
Target Start/End: Complemental strand, 35357512 - 35357174
Alignment:
| Q |
16 |
agagatgtgctacaaactaaaacaagagcgagagacaaaggggttgagtgtccttatgtctgtacggtttgcgaatcaagcaaggagaacacttggcctc |
115 |
Q |
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| T |
35357512 |
agagatgtgctacaaactaaaacaagagcgagagacaaaggggttgagtgtccttatgtctgtacagtttgcgaatcaagcaaggagaacacttggcctc |
35357413 |
T |
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| Q |
116 |
ttttccttaacttttccttgaagcgaaaaaatggtggctaaaatatggcttgcagaatacctcggaaccaaaactgacagcaatacagcatgacagtttt |
215 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35357412 |
ttttccttaactttcccttgaagcgaaaaaatggtggctaaaatatgacttgcagaatacctcggaaccaaaactgacagcaatacagcatgacagtttt |
35357313 |
T |
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| Q |
216 |
aaagccttatttttcgctgcaggtttagaataacactcatattaatctggctatggttctatatagtctatggcggagtcgaatgctatgctttcggagt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35357312 |
aaagccttatttttcgctgcaggtttagaataacactcatattaatctggctatggttctatatagtctatggcggagtcgaatgctatgctttgggagt |
35357213 |
T |
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| Q |
316 |
ccattcaggagcagccagaccagattttggcccgagcac |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
35357212 |
ccattcaggagcagccagaccagattttggcccgagcac |
35357174 |
T |
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