View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12648_low_4 (Length: 336)

Name: NF12648_low_4
Description: NF12648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12648_low_4
NF12648_low_4
[»] chr6 (7 HSPs)
chr6 (132-318)||(28073898-28074084)
chr6 (132-303)||(28016788-28016950)
chr6 (1-78)||(28074138-28074216)
chr6 (210-318)||(27916212-27916321)
chr6 (238-318)||(28034568-28034648)
chr6 (2-36)||(28034798-28034832)
chr6 (276-318)||(28001235-28001277)
[»] chr5 (1 HSPs)
chr5 (169-198)||(12240136-12240165)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 132 - 318
Target Start/End: Complemental strand, 28074084 - 28073898
Alignment:
Q  132 gcaattttctctttctatagagcttaggaaaagacccacaaactaactaaaatcctaactaactaacaaactgaagtgaagtctaactaatttctgtatt 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28074084 gcaattttctctttctatagagcttaggaaaagacccacaaactaactaaaatcctaactaactaacaaactgaagtgaagtctaactaatttctgtatt 28073985  T
Q  232 ttctaataaaccatattgatgaaacatgtattttagtttctagcaggctatgccagatgattattgctacttcttttgaggcatgtt 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28073984 ttctaataaaccatattgatgaaacatgtattttagtttctagcaggctatgccagatgattattgctacttcttttgaggcatgtt 28073898  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 132 - 303
Target Start/End: Complemental strand, 28016950 - 28016788
Alignment:
Q  132 gcaattttctctttctatagagcttaggaaaagacccacaaactaactaaaatcctaactaactaacaaactgaagtgaagtctaactaatttctgtatt 231  Q
    ||||||| |||||||||||||| | ||||||||| | |||| ||||||| |||  ||| ||||||||         |||||||||||||||||||  | |    
T  28016950 gcaatttgctctttctatagagatgaggaaaagatcaacaacctaactataatgttaattaactaac---------tgaagtctaactaatttctacaat 28016860  T
Q  232 ttctaataaaccatattgatgaaacatgtattttagtttctagcaggctatgccagatgattattgctactt 303  Q
    ||||||||||||||||||||||||||||| | | |||||||| ||||||| | |||||||||||||||||||    
T  28016859 ttctaataaaccatattgatgaaacatgtttctcagtttctaccaggctaggtcagatgattattgctactt 28016788  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 28074216 - 28074138
Alignment:
Q  1 ctgaagatttatctcataggtaaaataagcttgaga-nnnnnnnnngttggtagatatgcttgagagcttgatggagag 78  Q
    ||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||    
T  28074216 ctgaagatttatctcataggtaaaataagcttgagattttttttttgttggtagatatgcttgagagcttgatggagag 28074138  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 210 - 318
Target Start/End: Complemental strand, 27916321 - 27916212
Alignment:
Q  210 aagtctaactaatttctgtattttctaataaaccatattgatgaaacatgtattttagtttcta-gcaggctatgccagatgattattgctacttctttt 308  Q
    ||||||||||||||||| || |||||||||||| ||||||||| ||||||| | |   ||||||   | || || |||||| ||||||||||||||||||    
T  27916321 aagtctaactaatttctataatttctaataaactatattgatggaacatgtttctccttttctattaatgccataccagattattattgctacttctttt 27916222  T
Q  309 gaggcatgtt 318  Q
    ||||||||||    
T  27916221 gaggcatgtt 27916212  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 318
Target Start/End: Complemental strand, 28034648 - 28034568
Alignment:
Q  238 taaaccatattgatgaaacatgtattttagtttctagcaggctatgccagatgattattgctacttcttttgaggcatgtt 318  Q
    ||||||||||||||||||||||| | | ||||||||  |||||||   ||||||| | |||||||||||||||||||||||    
T  28034648 taaaccatattgatgaaacatgtttctcagtttctatgaggctatattagatgataactgctacttcttttgaggcatgtt 28034568  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 28034832 - 28034798
Alignment:
Q  2 tgaagatttatctcataggtaaaataagcttgaga 36  Q
    |||||||||||||||||||||||||||||||||||    
T  28034832 tgaagatttatctcataggtaaaataagcttgaga 28034798  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 318
Target Start/End: Complemental strand, 28001277 - 28001235
Alignment:
Q  276 aggctatgccagatgattattgctacttcttttgaggcatgtt 318  Q
    |||| |||||| ||||||||| |||||||||||||||||||||    
T  28001277 aggccatgccatatgattattactacttcttttgaggcatgtt 28001235  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 198
Target Start/End: Original strand, 12240136 - 12240165
Alignment:
Q  169 acaaactaactaaaatcctaactaactaac 198  Q
    ||||||||||||||||||||||||||||||    
T  12240136 acaaactaactaaaatcctaactaactaac 12240165  T

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