View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12648_low_5 (Length: 298)

Name: NF12648_low_5
Description: NF12648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12648_low_5
NF12648_low_5
[»] chr1 (2 HSPs)
chr1 (11-282)||(10410754-10411025)
chr1 (11-284)||(10416467-10416740)
[»] chr5 (5 HSPs)
chr5 (85-284)||(35375543-35375742)
chr5 (11-282)||(35405731-35406002)
chr5 (129-256)||(35436178-35436305)
chr5 (129-257)||(35753981-35754109)
chr5 (129-250)||(35422836-35422957)
[»] chr2 (3 HSPs)
chr2 (11-265)||(30662178-30662432)
chr2 (11-265)||(30634449-30634703)
chr2 (11-260)||(30670863-30671112)
[»] chr7 (1 HSPs)
chr7 (30-257)||(29623920-29624147)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 282
Target Start/End: Original strand, 10410754 - 10411025
Alignment:
Q  11 caaaggtatagctccgtagaagaagtttatacccagccatagttctgtcaaatctaggcaagaggctaaatctttaggaatttcacctgacaatttattc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  10410754 caaaggtatagctccgtagaagaagtttatacccagccatagttctgtcaaatctaggcaagaggctaaatatttaggaatttcacctgacaatttattc 10410853  T
Q  111 aagtttagatacaacgctgaaagatgcttcaagttaccaaactctgaaggaatgggaccggtcaaggaattattggctaagtcaagatatattaaaccat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10410854 aagtttagatacaacgctgaaagatgcttcaagttaccaaactctgaaggaatgggaccggtcaaggaattattggctaagtcaatatatattaaaccat 10410953  T
Q  211 ctagatagccaaatgtttgattaggaatatcaccactcaatttgttactagaaaagcttaatatctgcaatt 282  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10410954 ctagatagccaaatgtttgattgggaatatcaccactcaatttgttactagaaaagcttaatatctgcaatt 10411025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 11 - 284
Target Start/End: Original strand, 10416467 - 10416740
Alignment:
Q  11 caaaggtatagctccgtagaagaagtttatacccagccatagttctgtcaaatctaggcaagaggctaaatctttaggaatttcacctgacaatttattc 110  Q
    ||||||||||||||| |  |||||||||   |||| ||| |||||||||||   || |||||| ||||  || |||||||||||||| ||||| ||||||    
T  10416467 caaaggtatagctccatgaaagaagttttcccccaaccaaagttctgtcaatgttaagcaagaagctagttccttaggaatttcaccagacaacttattc 10416566  T
Q  111 aagtttagatacaacgctgaaagatgcttcaagttaccaaactctgaaggaatgggaccggtcaaggaattattggctaagtcaagatatattaaaccat 210  Q
    |||  |||||||||   |||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||    
T  10416567 aagcctagatacaaatgtgaaagttgcttcaaattaccaaactctgaaggaatgggaccggacaaggaattattggctaattcaagaaatattaaaccat 10416666  T
Q  211 ctagatagccaaatgtttgattaggaatatcaccactcaatttgttactagaaaagcttaatatctgcaatttg 284  Q
    ||| |||||||||||||||||  |||||||||||||| ||||||||  ||| |||| |||||| ||||||||||    
T  10416667 ctaaatagccaaatgtttgatcgggaatatcaccacttaatttgtttgtagcaaagtttaataactgcaatttg 10416740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 85 - 284
Target Start/End: Complemental strand, 35375742 - 35375543
Alignment:
Q  85 taggaatttcacctgacaatttattcaagtttagatacaacgctgaaagatgcttcaagttaccaaactctgaaggaatgggaccggtcaaggaattatt 184  Q
    ||||||||||||| ||||| ||||| |||  |||||||||   |||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  35375742 taggaatttcaccagacaacttatttaagcctagatacaattgtgaaagttgtttcaagttaccaaactctgaaggaatgggaccggtcaaggaattatt 35375643  T
Q  185 ggctaagtcaagatatattaaaccatctagatagccaaatgtttgattaggaatatcaccactcaatttgttactagaaaagcttaatatctgcaatttg 284  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||   |||| |||||||||||    
T  35375642 ggctaagccaagatatattaaaccatctagatagccaaatgtttgattgggaatatcaccactcaagttgttactataaaaatataatttctgcaatttg 35375543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 11 - 282
Target Start/End: Complemental strand, 35406002 - 35405731
Alignment:
Q  11 caaaggtatagctccgtagaagaagtttatacccagccatagttctgtcaaatctaggcaagaggctaaatctttaggaatttcacctgacaatttattc 110  Q
    ||||||||||||||| | |||||||||| | |||| |   |||| |||||| ||||||||||| |||||||| || ||||||||||||||||| ||||||    
T  35406002 caaaggtatagctccatggaagaagtttctccccaactcaagttttgtcaattctaggcaagaagctaaatcctttggaatttcacctgacaacttattc 35405903  T
Q  111 aagtttagatacaacgctgaaagatgcttcaagttaccaaactctgaaggaatgggaccggtcaaggaattattggctaagtcaagatatattaaaccat 210  Q
    ||  |||||| |||    ||||| ||||||||||||||||| ||||||||||||||||| |||||||| || |||   |||| |||| |||||||||| |    
T  35405902 aaacttagattcaaatgagaaagttgcttcaagttaccaaaatctgaaggaatgggacctgtcaaggagttgttgttcaagtaaagaaatattaaaccct 35405803  T
Q  211 ctagatagccaaatgtttgattaggaatatcaccactcaatttgttactagaaaagcttaatatctgcaatt 282  Q
     |||||| |||||||||||||| || |||| |||||||||| |||||||||||||  |||||| ||||||||    
T  35405802 ttagatatccaaatgtttgattgggcatatgaccactcaatctgttactagaaaaatttaataactgcaatt 35405731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 129 - 256
Target Start/End: Complemental strand, 35436305 - 35436178
Alignment:
Q  129 gaaagatgcttcaagttaccaaactctgaaggaatgggaccggtcaaggaattattggctaagtcaagatatattaaaccatctagatagccaaatgttt 228  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||  |||||||||| ||||||||  |||||||||||||||||||    
T  35436305 gaaagatgcttcaagttaccaaattctgaaggaatgggaccggtcaaggagttgttggacaagtcaagatttattaaactttctagatagccaaatgttt 35436206  T
Q  229 gattaggaatatcaccactcaatttgtt 256  Q
    ||| ||| || |  |||||||| |||||    
T  35436205 gatcaggtatgtggccactcaagttgtt 35436178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 129 - 257
Target Start/End: Complemental strand, 35754109 - 35753981
Alignment:
Q  129 gaaagatgcttcaagttaccaaactctgaaggaatgggaccggtcaaggaattattggctaagtcaagatatattaaaccatctagatagccaaatgttt 228  Q
    ||||||||||||| ||| |||||||| ||||||| |  ||| |||||| | || ||||  |||||||||| |||||| || |||||||||||||||||||    
T  35754109 gaaagatgcttcatgttgccaaactccgaaggaaggaaaccagtcaagaagttgttggacaagtcaagatttattaagccttctagatagccaaatgttt 35754010  T
Q  229 gattaggaatatcaccactcaatttgtta 257  Q
    |||| |||| |||||||||||||||||||    
T  35754009 gatttggaacatcaccactcaatttgtta 35753981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 35422957 - 35422836
Alignment:
Q  129 gaaagatgcttcaagttaccaaactctgaaggaatgggaccggtcaaggaattattggctaagtcaagatatattaaaccatctagatagccaaatgttt 228  Q
    |||||||||||||||||||||||| || |||||| |||||| ||||  || ||||| |  |||||||| | |||||||   |||||||||||||||   |    
T  35422957 gaaagatgcttcaagttaccaaaccctaaaggaaggggaccagtcagagagttattagacaagtcaaggtttattaaattttctagatagccaaatagat 35422858  T
Q  229 gattaggaatatcaccactcaa 250  Q
    ||| ||| ||||||||||||||    
T  35422857 gatcaggtatatcaccactcaa 35422836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 30662432 - 30662178
Alignment:
Q  11 caaaggtatagctccgtagaagaagtttatacccagccatagttctgtcaaatctaggcaagaggctaaatctttaggaatttcacctgacaatttattc 110  Q
    ||||||||||||||| | ||||||||||   |||| ||| |||||||||||  ||| |||||| |||||||| |||||||||||||| ||||| ||||||    
T  30662432 caaaggtatagctccatggaagaagtttcctcccaaccaaagttctgtcaatgctatgcaagaagctaaatccttaggaatttcaccagacaacttattc 30662333  T
Q  111 aagtttagatacaacgctgaaagatgcttcaagttaccaaactctgaaggaatgggaccggtcaaggaattattggctaagtcaagatatattaaaccat 210  Q
    ||| |||||| |||    ||||| |||||||||||||||||||||||||||||||| ||||||||| | || ||||  ||||||||||||| |||| |||    
T  30662332 aagcttagattcaattgagaaagttgcttcaagttaccaaactctgaaggaatggggccggtcaagaagttgttggacaagtcaagatatagtaaagcat 30662233  T
Q  211 ctagatagccaaatgtttgattaggaatatcaccactcaatttgttactagaaaa 265  Q
    ||||||||||||||||||||||  | |||||||||||||||||||||||| ||||    
T  30662232 ctagatagccaaatgtttgattgagtatatcaccactcaatttgttactataaaa 30662178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 30634703 - 30634449
Alignment:
Q  11 caaaggtatagctccgtagaagaagtttatacccagccatagttctgtcaaatctaggcaagaggctaaatctttaggaatttcacctgacaatttattc 110  Q
    ||||||||||||||| | ||||||||||   |||| ||| |||||||||||  ||| |||||| |||||||| |||||||||||||| ||||| ||||||    
T  30634703 caaaggtatagctccatggaagaagtttcctcccaaccaaagttctgtcaatgctatgcaagaagctaaatccttaggaatttcaccagacaacttattc 30634604  T
Q  111 aagtttagatacaacgctgaaagatgcttcaagttaccaaactctgaaggaatgggaccggtcaaggaattattggctaagtcaagatatattaaaccat 210  Q
    ||| |||||| |||    ||||| |||||||||||||||||||||||||||||||| ||||||||| | || || |  ||||||||| |||||||| |||    
T  30634603 aagcttagattcaattgagaaagttgcttcaagttaccaaactctgaaggaatggggccggtcaagaagttgttagacaagtcaagaaatattaaagcat 30634504  T
Q  211 ctagatagccaaatgtttgattaggaatatcaccactcaatttgttactagaaaa 265  Q
    ||||||||||||||||||||||  | |||||||||||||||||||||||| ||||    
T  30634503 ctagatagccaaatgtttgattgagtatatcaccactcaatttgttactataaaa 30634449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 30671112 - 30670863
Alignment:
Q  11 caaaggtatagctccgtagaagaagtttatacccagccatagttctgtcaaatctaggcaagaggctaaatctttaggaatttcacctgacaatttattc 110  Q
    ||||||||||||||| | ||||||||||   |||| ||| |||||||||||  ||| |||||| |||||||| |||||||||||||| ||||| ||||||    
T  30671112 caaaggtatagctccatggaagaagtttcctcccaaccaaagttctgtcaatgctatgcaagaagctaaatccttaggaatttcaccagacaacttattc 30671013  T
Q  111 aagtttagatacaacgctgaaagatgcttcaagttaccaaactctgaaggaatgggaccggtcaaggaattattggctaagtcaagatatattaaaccat 210  Q
    ||| |||||| |||    ||||| ||||||||||||||||| |||||||||||||| ||||||||  | || || |  ||||||| | |||||||| |||    
T  30671012 aagcttagatccaattgagaaagttgcttcaagttaccaaattctgaaggaatggggccggtcaataagttgttagacaagtcaaaaaatattaaagcat 30670913  T
Q  211 ctagatagccaaatgtttgattaggaatatcaccactcaatttgttacta 260  Q
    ||||||||||||||||||||||  | ||||||||||||||||||||||||    
T  30670912 ctagatagccaaatgtttgattgagtatatcaccactcaatttgttacta 30670863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 29623920 - 29624147
Alignment:
Q  30 aagaagtttatacccagccatagttctgtcaaatctaggcaagaggctaaatctttaggaatttcacctgacaatttattcaagtttagatacaacgctg 129  Q
    ||||||||| | |||| ||  |||||||||||   || |||||| |||| ||  || ||||||||||| || || |||||| ||| |||| ||||   ||    
T  29623920 aagaagtttctccccaacctaagttctgtcaatgataagcaagaagctagattcttgggaatttcaccagaaaacttattcgagtctagagacaatcgtg 29624019  T
Q  130 aaagatgcttcaagttaccaaactctgaaggaatgggaccggtcaaggaattattggctaagtcaagatatattaaaccatctagatagccaaatgtttg 229  Q
    |||| ||| | || ||||| ||||| ||||||||||||||||| ||||| || ||| | |||| |||| ||||||||   | |||||    |||| ||||    
T  29624020 aaagttgcattaatttaccgaactcagaaggaatgggaccggtgaaggagttgttgtccaagtgaagaaatattaaatgttttagatgaataaatttttg 29624119  T
Q  230 attaggaatatcaccactcaatttgtta 257  Q
    ||| || |||||||||||||||||||||    
T  29624120 attgggtatatcaccactcaatttgtta 29624147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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