View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12649_high_4 (Length: 312)
Name: NF12649_high_4
Description: NF12649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12649_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 5 - 303
Target Start/End: Complemental strand, 19729264 - 19728966
Alignment:
| Q |
5 |
gcacaacccccgggagccctaacaaatttctcagggctccagagggcatccttcattctttcgtggagttcatgatctataagcctgttggcaggcctac |
104 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19729264 |
gcacaacctccgggagccctaacaaatttctcagggctccagagggcatccttcattctttcgtggagttcatgatctataagcctattggcaggcctac |
19729165 |
T |
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| Q |
105 |
ctgaaggcacaaaagcatgttgtgcagctccaaagcaacaaacaagaggaggccaaccgtaggtatcacttatgtcctctccatcatatttttccagatc |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19729164 |
ctgaaggcacaaaagcatgttgtgcagctccaaagcaacaaacaagaggaggccaaccgtaggtatcacttatgtcctctccatcatatttttccagatc |
19729065 |
T |
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| Q |
205 |
caaaccatcgtcaatctcatcctccacattttcaataaaggaaggctcgtctatgtcaccgatttcggcttcaccaccacctttatcctctagaattat |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
19729064 |
caaaccatcgtcaatctcatcctccacattttcaataaaggaaggctcgtctatgtcactgatttcggcttcaccaccacctttatcctctaaaattat |
19728966 |
T |
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