View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12649_low_1 (Length: 263)
Name: NF12649_low_1
Description: NF12649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12649_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 49653815 - 49653578
Alignment:
| Q |
16 |
acttattagagcaccagccaccaaaccatacagtgttttagtggtaagaaaagggtaaatggaaatgacagtgattttgggtttagcaaagtaaga---t |
112 |
Q |
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| T |
49653815 |
acttattagagcaccagccaccaaaccatacagtgttttagtggtaagaaaagggtaaatggaaatgacagtgattttgggtttagcaaagtaagaagat |
49653716 |
T |
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| Q |
113 |
ttaagacttgtaatctttccatgcatgaaatgaaaaagaactgaatagttgaaaacttaagttagtttgatttataagctcagtaccatcaatgctctga |
212 |
Q |
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| T |
49653715 |
ttaagacttgtaatctttccatgcatgaaatgaaaaagaactgaatagttgaaaacttaagttagtttgatttataagctcagtaccatcaatgctctga |
49653616 |
T |
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| Q |
213 |
agaactttctttactttcctcctacaaccttcacagtg |
250 |
Q |
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| T |
49653615 |
agaactttctttactttcctcctacaaccttcacagtg |
49653578 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 14382068 - 14382124
Alignment:
| Q |
194 |
agtaccatcaatgctctgaagaactttctttactttcctcctacaaccttcacagtg |
250 |
Q |
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| T |
14382068 |
agtaccatcaatgcgctttaaaactttctttactttctttctgcaaccttcacagtg |
14382124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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