View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12649_low_2 (Length: 203)
Name: NF12649_low_2
Description: NF12649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12649_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 189
Target Start/End: Original strand, 21834442 - 21834615
Alignment:
| Q |
15 |
cagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaattcttctc |
114 |
Q |
| |
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||||||||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21834442 |
cagagaagggaatgaaacatatggtagaaagatgtacacaactgagagaaattaatttgggggatttgcatttaagtgacgaaaagaggaaattcttctc |
21834541 |
T |
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| Q |
115 |
gcgtcgtggatgccttctttgctagtatcctgtaagtagtttttgttttaagattttatgtcaacttacagatgt |
189 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
21834542 |
gcgtcgtggatgccttctttgctagtatcctgtaagt-gtttttgttttaagattttatgtcaacttacaaatgt |
21834615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 1600336 - 1600295
Alignment:
| Q |
92 |
gacgaaaagaggaaattcttctcgcgtcgtggatgccttctt |
133 |
Q |
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|||||||| ||||||||||||||| ||| ||||||||||||| |
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| T |
1600336 |
gacgaaaataggaaattcttctcgagtcatggatgccttctt |
1600295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 19632402 - 19632275
Alignment:
| Q |
15 |
cagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaattcttctc |
114 |
Q |
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||||||||||||||||||| |||||||||| || | || ||||| || ||| ||||||||||| | |||| ||| ||| ||| |||||| ||| || |
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| T |
19632402 |
cagagaagggagtgaaacacgtggtagaaaactgcaaacaactgaaggagatttatttgggggatattcattcaagtgacaaaactaggaaactctgctt |
19632303 |
T |
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| Q |
115 |
gcgtcgtggatgccttctttgctagtat |
142 |
Q |
| |
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||||| |||||||||||||||||||||| |
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| T |
19632302 |
gcgtcatggatgccttctttgctagtat |
19632275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 6594742 - 6594861
Alignment:
| Q |
15 |
cagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaattcttctc |
114 |
Q |
| |
|
||||| |||||| |||||| |||||||||| || |||| | |||||||||| ||||| ||| || |||||||| ||||||| ||| || ||||||| |
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| T |
6594742 |
cagaggagggagccaaacatgtggtagaaaactgcacacaattgagagaaatgtatttgaggggttgtcatttaagtgacgaaattagggaactcttctc |
6594841 |
T |
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| Q |
115 |
gcgtcgtggatgccttcttt |
134 |
Q |
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|||||| ||||||||||||| |
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| T |
6594842 |
gcgtcggggatgccttcttt |
6594861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 130
Target Start/End: Original strand, 7994324 - 7994433
Alignment:
| Q |
21 |
agggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaattcttctcgcgtcg |
120 |
Q |
| |
|
|||||||||||||| |||||||||| || || | ||||| ||| ||| |||| |||||||| ||| |||| ||| |||| ||| || |||||||||||| |
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| T |
7994324 |
agggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttaggggattttcatataagtgacaaaaatagggaactcttctcgcgtca |
7994423 |
T |
|
| Q |
121 |
tggatgcctt |
130 |
Q |
| |
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||||||||| |
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|
| T |
7994424 |
cggatgcctt |
7994433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 6589465 - 6589586
Alignment:
| Q |
21 |
agggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaattcttctcgcgtcg |
120 |
Q |
| |
|
|||||||||||||| |||||||||| || |||||||| ||| ||| || |||||||| | |||||||| ||| ||| ||| || ||||||| | || |
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| T |
6589465 |
agggagtgaaacatgtggtagaaaactgcacacgacttcaagagatttatctgggggatattcatttaagtgacaaaactagggaaatcttctcccatca |
6589564 |
T |
|
| Q |
121 |
tggatgccttctttgctagtat |
142 |
Q |
| |
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|||||||| ||||| ||||||| |
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| T |
6589565 |
tggatgccatctttactagtat |
6589586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 10579876 - 10580000
Alignment:
| Q |
18 |
agaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacga-aaagaggaaattcttctcgc |
116 |
Q |
| |
|
|||||||||| |||||| |||||||||| || |||| ||| ||||| ||| | |||| ||||| ||||||| || || ||| ||| |||||||| || |
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| T |
10579876 |
agaagggagttaaacatgtggtagaaaactgcacacaacttagagagatttacttggatgatttagatttaag-gaggataaataggggattcttcttgc |
10579974 |
T |
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| Q |
117 |
gtcgtggatgccttctttgctagtat |
142 |
Q |
| |
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||| |||||||||||||||||||||| |
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| T |
10579975 |
gtcatggatgccttctttgctagtat |
10580000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 6394827 - 6394700
Alignment:
| Q |
15 |
cagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaattcttctc |
114 |
Q |
| |
|
|||| ||||| ||| ||||| |||||||||| || |||| | ||||||| ||| ||||||||||| | || |||| |||||||| ||| || | | | |
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| T |
6394827 |
cagaaaagggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttgggggatattgatgtaagtgacgaaaatagggaacttctatt |
6394728 |
T |
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| Q |
115 |
gcgtcgtggatgccttctttgctagtat |
142 |
Q |
| |
|
|||||||||||||| | ||||||||||| |
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| T |
6394727 |
gcgtcgtggatgccgtatttgctagtat |
6394700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 14820656 - 14820529
Alignment:
| Q |
15 |
cagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaattcttctc |
114 |
Q |
| |
|
|||||||||| ||||||||| ||||| |||| || |||| |||||||| ||| |||||| || || |||||||| | ||| |||||| || | || |
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| T |
14820656 |
cagagaagggtgtgaaacatgtggtaaaaaactgcacacagctgagagagattaatttggcggggtttcatttaagtctcaaaattaggaaactcatatc |
14820557 |
T |
|
| Q |
115 |
gcgtcgtggatgccttctttgctagtat |
142 |
Q |
| |
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|||||||||||| | ||||||||||||| |
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| T |
14820556 |
gcgtcgtggatgtcatctttgctagtat |
14820529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 6423138 - 6423053
Alignment:
| Q |
57 |
tgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaattcttctcgcgtcgtggatgccttctttgctagtat |
142 |
Q |
| |
|
||||||| ||| ||||||| ||||| ||| |||| ||| |||| | |||| || ||| | ||||||||||||||||||||||||| |
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|
| T |
6423138 |
tgagagagatttatttgggagattttcatgtaagtgacaaaaataagaaactcatcttggatcgtggatgccttctttgctagtat |
6423053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 6597120 - 6597156
Alignment:
| Q |
101 |
aggaaattcttctcgcgtcgtggatgccttctttgct |
137 |
Q |
| |
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||||||||||||| ||||| ||||||||||||||||| |
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| T |
6597120 |
aggaaattcttcttgcgtcatggatgccttctttgct |
6597156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 15092294 - 15092414
Alignment:
| Q |
22 |
gggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaattcttctcgcgtcgt |
121 |
Q |
| |
|
||||||||||||| || ||||||| || |||| | ||||||| ||| ||||| || || | ||| |||| ||| ||| |||||| | |||||||||||| |
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| T |
15092294 |
gggagtgaaacatgtgctagaaaactgcacacaattgagagagattaatttgcggtatatccatgtaagtgacaaaactaggaaactattctcgcgtcgt |
15092393 |
T |
|
| Q |
122 |
ggatgccttctttgctagtat |
142 |
Q |
| |
|
||||||| | ||||||||||| |
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|
| T |
15092394 |
ggatgccatatttgctagtat |
15092414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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