View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_1D_high_1 (Length: 982)
Name: NF1264_1D_high_1
Description: NF1264_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_1D_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 694; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 21 - 811
Target Start/End: Original strand, 31751105 - 31751896
Alignment:
| Q |
21 |
atcaatgcataatttaaagagctcagaagctttcttgttttctactcagttatgtattattactattacaatatgtggcatgagagtttgtgaatcatgc |
120 |
Q |
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| T |
31751105 |
atcaatgcataatttaaagagctcagaagctttcttgttttctactcagttatgtattattactattacaatatgtggcatgagagtatgtgaatcatgc |
31751204 |
T |
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| Q |
121 |
cactaaatatttagagccataggaaaatgaaagatgtatgagtcttcaactttcacagttgaaagaaatttcctacatacgttgttgagttcttatgcaa |
220 |
Q |
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| T |
31751205 |
cactaaatatttagagccataggaaaatgaaagatgtatgagtcttcaactttcacagttgaaagaaatttcctacatacgttgttgagttcttatgcaa |
31751304 |
T |
|
| Q |
221 |
caatatgcttgttaatctattcaaatgcaaagcatttaccatgagaattaaaaatggcctttgaaaaggttctggaaccggagaaaattaaaggttactg |
320 |
Q |
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| T |
31751305 |
caatatgcttgttaatctattcaaatgcaaagcatttaccatgagaattaaaaatggcctttgaaaaggttctggaaccggagaaaattaaaggttactg |
31751404 |
T |
|
| Q |
321 |
atcagaaattttcaagtttaaatcttgacagtgc-aaaaaataaaaccttcaacactattaagttacatacatatctttgaagtactatcaaaatattac |
419 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31751405 |
atcagaagttttcaagtttaaatcttgacagtgcaaaaaaataaaaccttcaacactattaagttacatacatatctttgaagtactatcaaaatattac |
31751504 |
T |
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| Q |
420 |
acaataatcaacattacatggatccgactggaacttgactcggatcacgtaagcaaggtctcgggtttgagcctcgcagatgnnnnnnntgtggttgaga |
519 |
Q |
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| T |
31751505 |
acaataatcaacattacatggatccgactggaacttgactcggatcacgtaagcaaggtctcgggtttgagcctcgcagatgaaaaaaatgtggttgaga |
31751604 |
T |
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| Q |
520 |
ggggagaactcatagaggtgaccggtcaagtttgcctgcgaagattagtcgtatgcaaagttgatggatacttcgcacaaataacatgtttaccaaaaaa |
619 |
Q |
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| T |
31751605 |
ggggagaactcatagaggtgaccggtcaagtttgcctgcgaagattagtcgtatgcaaagttgatggatacttcgcaccaataacatgtttaccaaaaaa |
31751704 |
T |
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| Q |
620 |
atatctcccataataaatcaccaataatnnnnnnnnntaccagatgaagagtgttaggtgagnnnnnnnnnntcctagtctgatatgatacaagtgacca |
719 |
Q |
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| T |
31751705 |
atatctcccataataaatcaccaataatgaaaaaaaataccagatgaagagtgttaggtgagaaaaaaaaaatcctagtctgatatgatacaagtgacca |
31751804 |
T |
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| Q |
720 |
atcagaggaaagtaacattttacatctcccactgtatatccacacatgaattaaaccagaaattgaggaagggattattcaaaattttatat |
811 |
Q |
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| T |
31751805 |
atcagaggaaagtaacattttacatctcccactgtatatccacacatgaattaaaccagaaattgaggaagggattattcaaaattttatat |
31751896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 843 - 966
Target Start/End: Original strand, 31751928 - 31752051
Alignment:
| Q |
843 |
ttccatcctagcctcttcttgctaatacatgaggcacaaacatgtacagaaggatcgaaatatgacttgtatcgtcttaaagcatctatagaaaggaaaa |
942 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31751928 |
ttccatcctagcctcttcttgctaatacatgaggcacaaacatgtacagaaggatcgaaatatgacttgtatcgtcttaaagcatctatagaaaggaaaa |
31752027 |
T |
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| Q |
943 |
tatacaaacaagaaagctgatgtc |
966 |
Q |
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| T |
31752028 |
tatacaaacaagaaagctaatgtc |
31752051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 431 - 501
Target Start/End: Original strand, 15339554 - 15339624
Alignment:
| Q |
431 |
cattacatggatccgactggaacttgactcggatcacgtaagcaaggtctcgggtttgagcctcgcagatg |
501 |
Q |
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| T |
15339554 |
cattacattggtctgagtggaactggacccggatcccttaagcaaggtctctggtttgagcctcgtagatg |
15339624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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