View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1264_1D_high_10 (Length: 235)

Name: NF1264_1D_high_10
Description: NF1264_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1264_1D_high_10
NF1264_1D_high_10
[»] chr1 (5 HSPs)
chr1 (135-229)||(39769977-39770071)
chr1 (65-129)||(39759994-39760058)
chr1 (153-229)||(34978966-34979042)
chr1 (82-131)||(15802685-15802734)
chr1 (69-118)||(34979120-34979170)
[»] chr4 (1 HSPs)
chr4 (20-69)||(9546100-9546149)
[»] chr5 (1 HSPs)
chr5 (131-229)||(30087883-30087981)


Alignment Details
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 39769977 - 39770071
Alignment:
Q  135 aaactttcttcctcctagagatgccacatcatcataattctagcttaacatacacccaaagttagtttacaaagatgttaatctagagatgccac 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39769977 aaactttcttcctcctagagatgccacatcatcataattctagcttaacatacaaccaaagttagtttacaaagatgttaatctagagatgccac 39770071  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 39759994 - 39760058
Alignment:
Q  65 ttttcatgtcccttggtgatatatattagtggttacatttgccaatttaactttcatttaattta 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39759994 ttttcatgtcccttggtgatatatattagtggttacatttgccaatttaactttcatttaattta 39760058  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 34979042 - 34978966
Alignment:
Q  153 agatgccacatcatcataattctagcttaacatacacccaaagttagtttacaaagatgttaatctagagatgccac 229  Q
    |||||||||||||||||||||||||||||  ||| ||| ||  ||||||||||||||||||||||||||||||||||    
T  34979042 agatgccacatcatcataattctagcttagaataaacctaagtttagtttacaaagatgttaatctagagatgccac 34978966  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 15802734 - 15802685
Alignment:
Q  82 gatatatattagtggttacatttgccaatttaactttcatttaatttaat 131  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  15802734 gatatatagtagtggttacatttgcctatttaactttcatttaatttaat 15802685  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 34979170 - 34979120
Alignment:
Q  69 catgtcccttgg-tgatatatattagtggttacatttgccaatttaacttt 118  Q
    ||||| |||||| ||||||||||||||||||||||||||| ||||||||||    
T  34979170 catgtgccttggatgatatatattagtggttacatttgcctatttaacttt 34979120  T

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Target: chr4 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 9546100 - 9546149
Alignment:
Q  20 gttgtgaaattgaataatcaccaccactttctgcaacttgtttatttttc 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9546100 gttgtgaaattgaataatcaccaccactttctgcaacttgtttatttttc 9546149  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 229
Target Start/End: Original strand, 30087883 - 30087981
Alignment:
Q  131 tgtgaaactttcttcctcctagagatgccacatcatcataattctagcttaacatacacccaaagttagtttacaaagatgttaatctagagatgccac 229  Q
    ||||||||||||||  |||| ||  ||||||||||||||||||||||||||| |||   ||| | || || ||||||||||||||||||||||||||||    
T  30087883 tgtgaaactttcttagtccttgaagtgccacatcatcataattctagcttaatatagttccatattttgtctacaaagatgttaatctagagatgccac 30087981  T

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