View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_1D_high_5 (Length: 378)
Name: NF1264_1D_high_5
Description: NF1264_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_1D_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 22 - 368
Target Start/End: Complemental strand, 18323727 - 18323381
Alignment:
| Q |
22 |
acctacataaattaaatattaagttccataaaggagtattctgattagttaaagaaaaacacgattgcacctgtttatgaaggtccgttttgatttgcaa |
121 |
Q |
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| T |
18323727 |
acctacataaattaaatattaagttccataaaggagtattgtgatcagttaaagaaaaacacgattgcacctgtttatgaaggtccgttttgatttgcaa |
18323628 |
T |
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| Q |
122 |
aatgaacaaatatcggacataatataggatataaccttcctaaattctaggtgtcgcaatttttcttcttcttaatctatcaaagagcggtgatttagct |
221 |
Q |
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| T |
18323627 |
aatgaacaaatattggacataatataggatataaccttcctaaattctaggtgtcgcaatttttcttcttcttgatctaccaaagagcggtgatttagct |
18323528 |
T |
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| Q |
222 |
tgttaacttccaccttaataagaagctgcatcaaaattttgtctttaatttaaattgtttgattaggcacgactcgtgccgcacgagaaaccggttagtt |
321 |
Q |
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| T |
18323527 |
tgctaacttgcaccttagtaagaagctgcatcaaaattttgtctttaatttaaattgtttgattaggcacgactcgtgccgcacgaggaaccggttagtt |
18323428 |
T |
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| Q |
322 |
tggttagctaccgagtaccaagccatccagttaaagacagaatcttt |
368 |
Q |
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| T |
18323427 |
tggttaactaccgagtaccaagccatccagttaaagacagaatcttt |
18323381 |
T |
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