View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_1D_high_7 (Length: 274)
Name: NF1264_1D_high_7
Description: NF1264_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_1D_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 18323375 - 18323202
Alignment:
| Q |
1 |
aggttaaccaataattagcaccctgtcctaagcaaatcattcctttatcacgggtgtacgaaggtgcatattttactgtctttcacatgttttcaattca |
100 |
Q |
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| T |
18323375 |
aggttaaccaataattagcaccctgtcctaagcaaatcattcctttatcacgggtgtacgaaggtgcatattttactgtctttcacatgttttcaattca |
18323276 |
T |
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| Q |
101 |
atgagagtggttaattaactaattctctcccacaatataggagattttagtggtacaagtttatatacatatag |
174 |
Q |
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| T |
18323275 |
aagagagtggttaattaactaattctctcccacaatataggagattttagtggtacaagtttatatacatatag |
18323202 |
T |
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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 615650 - 615693
Alignment:
| Q |
198 |
tacgtgaaagagattcgttcttttccatcactttgatatatatg |
241 |
Q |
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| T |
615650 |
tacgtgaaagagattcgttcttttccatcactttgatatatatg |
615693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 498660 - 498617
Alignment:
| Q |
198 |
tacgtgaaagagattcgttcttttccatcactttgatatatatg |
241 |
Q |
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| T |
498660 |
tacgtgaaagagattcgttcttttccatcactttgacatatatg |
498617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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