View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1264_1D_high_8 (Length: 263)
Name: NF1264_1D_high_8
Description: NF1264_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_1D_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 38370948 - 38370690
Alignment:
| Q |
1 |
agtcctcagcatgaaccatatacatatgaattggaagaaaaaactactccttctggtatatttgctagaggaacctatgcagcaagaaccaaggtaaaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38370948 |
agtcctcagcatgaaccatatacatatgaattggaagaaaaaactactccttctggtatatttgctagaggaacctatgcagcaagaaccaaggtaaaat |
38370849 |
T |
|
| Q |
101 |
taatattcatcaagttgaatttcttatttgtttttcttggttaaataactcnnnnnnnnnnnnnnnnnnnncttggttcagtttgtagatgatgataaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38370848 |
taatattcatcaagttgaatttcttatttgtttttcttggttaaataactc-tttttttttttttctttttcttggttcagtttgtagatgatgataaaa |
38370750 |
T |
|
| Q |
201 |
aatgctacttggatgtgagttactactttgaaattcagaggaactggggaacaccaaact |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38370749 |
aatgctacttggatgtgagttactactttgaaattcagaggaactggggaacacctaact |
38370690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 34880537 - 34880627
Alignment:
| Q |
7 |
cagcatgaaccatatacatatgaattggaagaaaaaactactccttctggtatatttgctagaggaacctatgcagcaagaaccaaggtaa |
97 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||| ||| ||||| || | |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34880537 |
cagcaggaaccatatacatatgaattggaagaagaaattaccccttcaggcttgtttgctagaggaacctattcagcaagaaccaaggtaa |
34880627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 34880907 - 34880947
Alignment:
| Q |
175 |
ggttcagtttgtagatgatgataaaaaatgctacttggatg |
215 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34880907 |
ggttcagtttgtagatgatgatcgcaaatgctacttggatg |
34880947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 52894206 - 52894283
Alignment:
| Q |
22 |
acatatgaattggaagaaaaaactactccttctggtatatttgctagaggaacctatgcagcaagaaccaaggtaaaat |
100 |
Q |
| |
|
|||||||||||||||||| |||| |||||||| ||||||||||||| ||| |||||||| ||||||||||||||||| |
|
|
| T |
52894206 |
acatatgaattggaagaagaaac-actccttcgagtatatttgctaggggagcctatgcactaagaaccaaggtaaaat |
52894283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University