View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_1D_low_10 (Length: 293)
Name: NF1264_1D_low_10
Description: NF1264_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_1D_low_10 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 24491657 - 24491863
Alignment:
| Q |
1 |
gagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491657 |
gagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgta |
24491756 |
T |
|
| Q |
101 |
ggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattatt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491757 |
ggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattatt |
24491856 |
T |
|
| Q |
201 |
ccttata |
207 |
Q |
| |
|
||||||| |
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| T |
24491857 |
ccttata |
24491863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 24495215 - 24495421
Alignment:
| Q |
1 |
gagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495215 |
gagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgta |
24495314 |
T |
|
| Q |
101 |
ggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattatt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495315 |
ggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattatt |
24495414 |
T |
|
| Q |
201 |
ccttata |
207 |
Q |
| |
|
||||||| |
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| T |
24495415 |
ccttata |
24495421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 159
Target Start/End: Original strand, 2810226 - 2810371
Alignment:
| Q |
14 |
tattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattatt |
113 |
Q |
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|||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2810226 |
tattaagcattttagacgagagttattctgtgattaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctctaggaagcaattatt |
2810325 |
T |
|
| Q |
114 |
aggacagcaaatatgtttctatatattgtgccaatataccttgtga |
159 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
2810326 |
aggacaacaaatatgtttctatatattgtaccaatataccttgtga |
2810371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 24358970 - 24359176
Alignment:
| Q |
1 |
gagatactagtattattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24358970 |
gagatactagtattattaagcatttaagatgagagttaatctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgta |
24359069 |
T |
|
| Q |
101 |
ggaagcaattattaggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattatt |
200 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24359070 |
ggaagcaattattaggacaacaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattatt |
24359169 |
T |
|
| Q |
201 |
ccttata |
207 |
Q |
| |
|
||||||| |
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|
| T |
24359170 |
ccttata |
24359176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 86729 - 86922
Alignment:
| Q |
14 |
tattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattatt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
86729 |
tattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattatt |
86828 |
T |
|
| Q |
114 |
aggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttatac |
208 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
86829 |
aggacagcaaatatgtttctatatattgtgccaaaataccttgtgaatgatatagc-aaaaatcattattccttatatatcattattccttatac |
86922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 18556765 - 18556573
Alignment:
| Q |
14 |
tattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattatt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
18556765 |
tattaagcatttaagatgagagttattctgtgatcaagaaataatatcacactataattgactagagaaagtcaaaccatagctggaggaagcaattatt |
18556666 |
T |
|
| Q |
114 |
aggacagcaaatatgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
207 |
Q |
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|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
18556665 |
aggacagcaaatatgtttctatatattgtaccaatataccttgtgaatgatatagca-aaaatcattattccatacatatcattattccttata |
18556573 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 208 - 279
Target Start/End: Original strand, 22684888 - 22684959
Alignment:
| Q |
208 |
cttacagttgtccaaattgctatctgtgatgcatataactttttgggcatgtttaaggtaaactgggattca |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22684888 |
cttacagttgtccaaattgctatctgtgatgcatataactctttgggcatgtttaaggtaaactgggattca |
22684959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 22697011 - 22697086
Alignment:
| Q |
208 |
cttacagttgtccaaattgctatctgtgatgcatataactttttgggcatgtttaaggtaaactgggattcagttt |
283 |
Q |
| |
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||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22697011 |
cttacagttgtccaagttgctatctttgatgcatataactctttgggcatgtttaaggtaaactgggattcagttt |
22697086 |
T |
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