View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1264_1D_low_11 (Length: 277)

Name: NF1264_1D_low_11
Description: NF1264_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1264_1D_low_11
NF1264_1D_low_11
[»] chr4 (5 HSPs)
chr4 (7-267)||(1600727-1600987)
chr4 (90-171)||(55908337-55908418)
chr4 (89-247)||(3438186-3438343)
chr4 (90-171)||(1527812-1527893)
chr4 (91-143)||(641321-641373)
[»] chr6 (5 HSPs)
chr6 (90-160)||(7993805-7993875)
chr6 (60-166)||(6588949-6589055)
chr6 (96-162)||(6596567-6596633)
chr6 (129-249)||(8913599-8913723)
chr6 (90-162)||(6432557-6432629)
[»] chr2 (1 HSPs)
chr2 (90-171)||(1037273-1037354)
[»] scaffold0262 (1 HSPs)
scaffold0262 (90-171)||(326-407)
[»] chr1 (2 HSPs)
chr1 (122-250)||(19468038-19468166)
chr1 (91-199)||(33160914-33161022)
[»] scaffold0014 (1 HSPs)
scaffold0014 (60-119)||(89137-89196)
[»] chr5 (1 HSPs)
chr5 (60-171)||(28532084-28532195)
[»] chr8 (1 HSPs)
chr8 (61-171)||(17627668-17627778)


Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 1600727 - 1600987
Alignment:
Q  7 tttacaacacaattccctactctttcatatgcaatatttgcgcatgccattacgatctcattaagtaaaggacacttctcattgagtgcaaacaaggctg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600727 tttacaacacaattccctactctttcatatgcaatatttgcgcatgccattacgatctcattaagtaaaggacacttctcattgagtgcaaacaaggctg 1600826  T
Q  107 attctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctttcaaaaaatcggctct 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1600827 attctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacaaggcaacatggcgatctttcaaaaaatcggctct 1600926  T
Q  207 tttaagaaccaaatgttggatacgttgacacttggataacaaactaactactccagtataa 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1600927 tttaagaaccaaatgttggatacgttgacacttggataacaaactaactactccaatataa 1600987  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 55908418 - 55908337
Alignment:
Q  90 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 171  Q
    ||||||||||| ||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  55908418 gagtgcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaaacaaagacaac 55908337  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 247
Target Start/End: Complemental strand, 3438343 - 3438186
Alignment:
Q  89 tgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatc 188  Q
    |||||| ||| |||||| ||| |||||||||   ||| ||||||||||||||||| |||||||||||| |||||   | ||||  | |||||||||||||    
T  3438343 tgagtgaaaataaggctaattttgtgagcatcgaacaatcactaaggtttatagacaccaaatcaccatgaaacatggacaacttgacaacatggcgatc 3438244  T
Q  189 tttcaaaaaatcggctcttttaagaaccaaatgttggatacgttgacacttggataaca 247  Q
     || | ||| |  | | ||| |||| |||||||||| |||| |||||||||||||||||    
T  3438243 atttagaaagtaag-tttttgaagatccaaatgttgtatacattgacacttggataaca 3438186  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 1527893 - 1527812
Alignment:
Q  90 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 171  Q
    |||||||||||||||| | | ||||||  ||  ||||| ||||| ||||||||| | |||||||| ||||||||||| ||||    
T  1527893 gagtgcaaacaaggctaaatgtgtgaggctatcacatttactaatgtttatagacaacaaatcactaagaaacgaagacaac 1527812  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 641321 - 641373
Alignment:
Q  91 agtgcaaacaaggctgattctgtgagcatactacattcactaaggtttataga 143  Q
    ||||||||||||| ||||| ||||||| ||| ||| | |||||||||||||||    
T  641321 agtgcaaacaaggttgattttgtgagcttaccacaatgactaaggtttataga 641373  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 160
Target Start/End: Complemental strand, 7993875 - 7993805
Alignment:
Q  90 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaa 160  Q
    ||||| |||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||    
T  7993875 gagtgaaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaa 7993805  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 166
Target Start/End: Complemental strand, 6589055 - 6588949
Alignment:
Q  60 gatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaaga 159  Q
    |||||||  ||||||||||||||||  |   ||||||||||| ||||||||||||| | |||| || | |||||||||||  || |||||||||||||||    
T  6589055 gatctcaccaagtaaaggacacttcctagcaagtgcaaacaaagctgattctgtgatcttactgcaattactaaggtttacggacaccaaatcaccaaga 6588956  T
Q  160 aacgaag 166  Q
    || ||||    
T  6588955 aaggaag 6588949  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 6596633 - 6596567
Alignment:
Q  96 aaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaac 162  Q
    ||||| |||||||||||||||| |   ||| | | ||||||||||||||||||||||||||||||||    
T  6596633 aaacacggctgattctgtgagccttgaacaatgattaaggtttatagaaaccaaatcaccaagaaac 6596567  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 8913723 - 8913599
Alignment:
Q  129 actaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctttcaaa----aaatcggctcttttaagaaccaaatgttg 224  Q
    ||||||||||||||| ||||||| |||||||||| ||| ||||  | |||||||  |||| |||| |    ||||  |  || |||||||||||||||||    
T  8913723 actaaggtttatagacaccaaattaccaagaaacaaagacaacttgacaacatgttgatcattcatatataaaataagtgctattaagaaccaaatgttg 8913624  T
Q  225 gatacgttgacacttggataacaaa 249  Q
     | || |||||||||||||||||||    
T  8913623 taaacattgacacttggataacaaa 8913599  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 6432557 - 6432629
Alignment:
Q  90 gagtgcaaacaaggctgattctgtgagcata-ctacattcactaaggtttatagaaaccaaatcaccaagaaac 162  Q
    ||||| ||||| ||||||||||||||| ||| | ||| | ||||||||||||||| ||||||||| ||||||||    
T  6432557 gagtgaaaacagggctgattctgtgag-atatcgacaattactaaggtttatagacaccaaatcagcaagaaac 6432629  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 1037354 - 1037273
Alignment:
Q  90 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 171  Q
    ||||||||||| ||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||| ||||    
T  1037354 gagtgcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaaacaaagacaac 1037273  T

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Target: scaffold0262 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 326 - 407
Alignment:
Q  90 gagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaac 171  Q
    ||||||||||| || ||| | ||||||||| |||||||||||||| |||||||| |||||||| ||||||||| ||| ||||    
T  326 gagtgcaaacatggttgagtatgtgagcatgctacattcactaagatttatagacaccaaatcgccaagaaacaaagacaac 407  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 250
Target Start/End: Complemental strand, 19468166 - 19468038
Alignment:
Q  122 tacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctttcaaaaaatcggctcttttaagaaccaaatg 221  Q
    |||||||||||||||||||||| || ||||||||||||||| ||| ||||    |||||| | |||| ||||||||  | || | || |||| |||||||    
T  19468166 tacattcactaaggtttatagacactaaatcaccaagaaacaaagacaacttatcaacatagtgatcattcaaaaacccagcacgttgaagatccaaatg 19468067  T
Q  222 ttggatacgttgacacttggataacaaac 250  Q
    ||| | || |  |||||||||||||||||    
T  19468066 ttgcaaacctgcacacttggataacaaac 19468038  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 33160914 - 33161022
Alignment:
Q  91 agtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaaacgaagtcaacagggcaacatggcgatctt 190  Q
    |||| |||||| ||||||||||||||| | | |||| || ||||||||||||| |||||| || |||||||| |||  |||  |||||||||  |||| |    
T  33160914 agtgaaaacaatgctgattctgtgagcctccaacatccattaaggtttatagacaccaaagcagcaagaaacaaagagaactcggcaacatgttgatcat 33161013  T
Q  191 tcaaaaaat 199  Q
    ||| |||||    
T  33161014 tcagaaaat 33161022  T

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Target: scaffold0014 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 89137 - 89196
Alignment:
Q  60 gatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcat 119  Q
    ||||||| | ||| ||||| | |||| ||||||||||||||||||||| |||||||||||    
T  89137 gatctcactgagtgaaggatagttctaattgagtgcaaacaaggctgagtctgtgagcat 89196  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 171
Target Start/End: Original strand, 28532084 - 28532195
Alignment:
Q  60 gatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaaga 159  Q
    |||||||  |||||||||||| |||  |  |||||||||||| | ||||||||| ||| ||  ||| | ||||||||| || || | |||||||||||||    
T  28532084 gatctcaccaagtaaaggacagttcctagcgagtgcaaacaaagatgattctgttagcttatcacaattactaaggttgatggacatcaaatcaccaaga 28532183  T
Q  160 aacgaagtcaac 171  Q
    ||||||| ||||    
T  28532184 aacgaagacaac 28532195  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 17627778 - 17627668
Alignment:
Q  61 atctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaagaa 160  Q
    |||||||||||| ||||||| ||   |  ||||| |||||||||||||||   |||||| | ||| | ||||||||||| ||| ||||||| ||||||||    
T  17627778 atctcattaagtgaaggacatttactaacgagtgaaaacaaggctgattcgtcgagcatccgacaataactaaggtttacagacaccaaattaccaagaa 17627679  T
Q  161 acgaagtcaac 171  Q
    | |||| ||||    
T  17627678 atgaagacaac 17627668  T

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