View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1264_1D_low_14 (Length: 253)

Name: NF1264_1D_low_14
Description: NF1264_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1264_1D_low_14
NF1264_1D_low_14
[»] chr5 (11 HSPs)
chr5 (23-191)||(37428840-37429008)
chr5 (22-191)||(37639979-37640148)
chr5 (127-191)||(37400762-37400826)
chr5 (48-191)||(37435840-37435983)
chr5 (134-191)||(37413140-37413197)
chr5 (22-191)||(37594431-37594600)
chr5 (127-191)||(37711836-37711900)
chr5 (22-191)||(37702775-37702944)
chr5 (127-191)||(37392776-37392840)
chr5 (127-191)||(37696933-37696997)
chr5 (127-191)||(37824107-37824171)
[»] chr3 (2 HSPs)
chr3 (182-240)||(53173668-53173726)
chr3 (43-191)||(14553238-14553386)
[»] chr4 (1 HSPs)
chr4 (127-191)||(16842760-16842824)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 23 - 191
Target Start/End: Original strand, 37428840 - 37429008
Alignment:
Q  23 agatggagtcaatattactgtcaaagttgatagaaagaaagctattgtgcgaaagatcgaggaaagtaagtaatttaaacttagaaaaattgtaaaagtc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37428840 agatggagtcaatattactgtcaaagttgatagaaagaaagctattgtgcgaaagatcgaggaaagtaagtaatttaaacttagaaaaattgtaaaagtc 37428939  T
Q  123 tactacacctctcaagttggttgatgacaaagctaagtaagtaagattttggatttcaaatattgaatt 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37428940 tactacacctctcaagttggttgatgacaaagctaagtaagtaagattttggatttcaaatattgaatt 37429008  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 37639979 - 37640148
Alignment:
Q  22 aagatggagtcaatattactgtcaaagttgatagaaagaaagctattgtgcgaaagatcgaggaaagtaagtaatttaaacttagaaaaattgtaaaagt 121  Q
    ||||||||||||  | | || |||| ||||||||||||||| ||||| || |||||||| ||| || | |||   || || || ||||| | || ||| |    
T  37639979 aagatggagtcagcactgctatcaatgttgatagaaagaaaactattatgggaaagatcaagggaacttagtttgtttaattttgaaaattggtgaaaat 37640078  T
Q  122 ctactacacctctcaagttggttgatgacaaagctaagtaagtaagattttggatttcaaatattgaatt 191  Q
    | || ||||| |||||||| |||||||||||| ||||||||||||||||||||| || ||||||||||||    
T  37640079 ccacaacaccactcaagtttgttgatgacaaatctaagtaagtaagattttggagttgaaatattgaatt 37640148  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 37400826 - 37400762
Alignment:
Q  127 acacctctcaagttggttgatgacaaagctaagtaagtaagattttggatttcaaatattgaatt 191  Q
    ||||| |||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  37400826 acaccactcaagtttgttgatgacaaatctaagtaagtaagattttggagttcaaatattgaatt 37400762  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 191
Target Start/End: Original strand, 37435840 - 37435983
Alignment:
Q  48 gttgatagaaagaaagctattgtgcgaaagatcgaggaaagtaagtaatttaaacttagaaaaattgtaaaagtctactacacctctcaagttggttgat 147  Q
    ||||||||||||||| |||||||||||||||| ||||| | | ||   |||||  || ||||| | || ||| || || ||||| |||||||| ||||||    
T  37435840 gttgatagaaagaaaactattgtgcgaaagattgaggagaattagatttttaagttttgaaaattggtgaaaatccacaacaccactcaagtttgttgat 37435939  T
Q  148 gacaaagctaagtaagtaagattttggatttcaaatattgaatt 191  Q
    |||||| |||| | |||||||||||||| || ||||||||||||    
T  37435940 gacaaatctaattcagtaagattttggagttgaaatattgaatt 37435983  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 37413197 - 37413140
Alignment:
Q  134 tcaagttggttgatgacaaagctaagtaagtaagattttggatttcaaatattgaatt 191  Q
    ||||||| |||||||||||| ||||||||||||||||||||| || ||||||||||||    
T  37413197 tcaagtttgttgatgacaaacctaagtaagtaagattttggaatttaaatattgaatt 37413140  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 37594431 - 37594600
Alignment:
Q  22 aagatggagtcaatattactgtcaaagttgatagaaagaaagctattgtgcgaaagatcgaggaaagtaagtaatttaaacttagaaaaattgtaaaagt 121  Q
    ||||||||||||  | | || |||||||||||||||||||| |||||||| ||||||| |||  |    |||   || || || ||||| | || ||| |    
T  37594431 aagatggagtcagcactgctatcaaagttgatagaaagaaaactattgtgtgaaagatggagatattctagtttgtttaattttgaaaattggtgaaaat 37594530  T
Q  122 ctactacacctctcaagttggttgatgacaaagctaagtaagtaagattttggatttcaaatattgaatt 191  Q
    | || ||||| |||||||||||||||||||||| ||||||||  |||||||||| || ||||||||||||    
T  37594531 cgacaacaccactcaagttggttgatgacaaagttaagtaagatagattttggagttgaaatattgaatt 37594600  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 37711836 - 37711900
Alignment:
Q  127 acacctctcaagttggttgatgacaaagctaagtaagtaagattttggatttcaaatattgaatt 191  Q
    ||||| |||||||| ||||||||||||  |||||||||||||||||||| || ||||||||||||    
T  37711836 acaccactcaagtttgttgatgacaaatataagtaagtaagattttggagttgaaatattgaatt 37711900  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 37702775 - 37702944
Alignment:
Q  22 aagatggagtcaatattactgtcaaagttgatagaaagaaagctattgtgcgaaagatcgaggaaagtaagtaatttaaacttagaaaaattgtaaaagt 121  Q
    ||||||||||||  | | || |||| ||||||||||| ||| |||||||| ||||||  |||| || | |||  ||| || || ||||| | || ||| |    
T  37702775 aagatggagtcagcactgctatcaatgttgatagaaataaaactattgtgtgaaagaatgagggaatttagtttttttaattttgaaaattggtgaaaat 37702874  T
Q  122 ctactacacctctcaagttggttgatgacaaagctaagtaagtaagattttggatttcaaatattgaatt 191  Q
    | || ||||| |||||||| ||||| |||||| ||||||  ||||||||||||| |||| ||||||||||    
T  37702875 ccacgacaccactcaagtttgttgacgacaaatctaagttggtaagattttggagttcatatattgaatt 37702944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 37392840 - 37392776
Alignment:
Q  127 acacctctcaagttggttgatgacaaagctaagtaagtaagattttggatttcaaatattgaatt 191  Q
    ||||| || ||||| ||||| |||||| ||||||  ||||||||||||| |||||||||||||||    
T  37392840 acaccacttaagtttgttgaagacaaatctaagttggtaagattttggagttcaaatattgaatt 37392776  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 37696933 - 37696997
Alignment:
Q  127 acacctctcaagttggttgatgacaaagctaagtaagtaagattttggatttcaaatattgaatt 191  Q
    ||||| |||||||||||||||||||||  ||| |  ||||| ||||||| || ||||||||||||    
T  37696933 acaccactcaagttggttgatgacaaatataactcggtaaggttttggagttgaaatattgaatt 37696997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 37824107 - 37824171
Alignment:
Q  127 acacctctcaagttggttgatgacaaagctaagtaagtaagattttggatttcaaatattgaatt 191  Q
    ||||| |||||||| ||||||||||||  ||| |  ||||||||||||| || ||||||||||||    
T  37824107 acaccactcaagtttgttgatgacaaaattaactcggtaagattttggagttgaaatattgaatt 37824171  T

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Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 53173668 - 53173726
Alignment:
Q  182 atattgaattggtcatacagaagttctacaagttttcatcttttgcattgtttatttat 240  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  53173668 atattgaattggtcacacagaagttctacaagttttcatcttttgcattatttatttat 53173726  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 191
Target Start/End: Original strand, 14553238 - 14553386
Alignment:
Q  43 tcaaagttgatagaaagaaagctattgtgcgaaagatcgaggaaagtaagtaatttaaacttagaaaaattgtaaaagtctactacacctctcaagttgg 142  Q
    |||| ||||||||||| ||| |||||||| |||||||||||| || | |||  ||| || || ||||| | || ||| || || ||||| |||||||| |    
T  14553238 tcaatgttgatagaaataaaactattgtgtgaaagatcgagggaatttagtttttttaattttgaaaattggtgaaaatccacaacaccactcaagtttg 14553337  T
Q  143 ttgatgacaaagctaagtaagtaagattttggatttcaaatattgaatt 191  Q
    | |||||||||  |||||  ||||||||||||| |||||||||||||||    
T  14553338 tggatgacaaatataagtcggtaagattttggagttcaaatattgaatt 14553386  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 16842824 - 16842760
Alignment:
Q  127 acacctctcaagttggttgatgacaaagctaagtaagtaagattttggatttcaaatattgaatt 191  Q
    ||||| |||||||| |||||||| ||| ||| |   ||||||||||||| |||||||||||||||    
T  16842824 acaccactcaagtttgttgatgataaatctagggcggtaagattttggagttcaaatattgaatt 16842760  T

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