View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_1D_low_17 (Length: 235)
Name: NF1264_1D_low_17
Description: NF1264_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_1D_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 6 - 171
Target Start/End: Complemental strand, 35128706 - 35128536
Alignment:
| Q |
6 |
gtgttattggggctctgaagtt-----caaggattattgtcagattaataaataatgtattagaaacttagcagcttaatactgaagattttgcgctttt |
100 |
Q |
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| T |
35128706 |
gtgttattggggctctgaagttacgttccaggattattgtcagattaataaataatgtattagaaacttagcagcttaatactaaagattttgcgctttt |
35128607 |
T |
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| Q |
101 |
tcacggtttttggaaataaaattgtgggaaatcgtcaaatatagatgtgaagtttcattacatgtcattac |
171 |
Q |
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| T |
35128606 |
tcacggtttttggaaataagattgtgggaaatcgtcaaatatagatgtgaagtttcattacatgtcattac |
35128536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 170
Target Start/End: Original strand, 35099331 - 35099495
Alignment:
| Q |
6 |
gtgttattggggctctgaagttcaaggattattgtcagattaataaataatgtattagaaacttagcagcttaatactgaagattttgcgctttttcacg |
105 |
Q |
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| T |
35099331 |
gtgtcattgaggctctgaagttcaaggattattgtgagattaataaataacgtattagaaacttagtagcttactagtaaagattttgtgttttttcacg |
35099430 |
T |
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| Q |
106 |
gtttttggaaataaaattgtgggaaatcgtcaaatatagatgtgaagtttcattacatgtcatta |
170 |
Q |
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| T |
35099431 |
gttatgggaaaggaaattgtgggaaatcgtcaaatagagatgtgaagttttgttacatgccatta |
35099495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 10192649 - 10192559
Alignment:
| Q |
11 |
attggggctctgaagttcaaggattattgtcagattaataaataatgtattagaaacttagcagcttaatactgaagattttgcgctttttcacg |
105 |
Q |
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| T |
10192649 |
attggggcccagaagtttaaggattgttgtcagattaataa----tgtattagaaatttggcagcttactggtaaagattttgtgctttttcacg |
10192559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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