View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_1D_low_19 (Length: 231)
Name: NF1264_1D_low_19
Description: NF1264_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_1D_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 21813109 - 21812888
Alignment:
| Q |
1 |
aaacaccatacagcgtcaaatgacaaaattccaaactcattactactattctcaagtgaccaaacaaatgcatataccaaatacctttctaacgtgattg |
100 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21813109 |
aaacaccacacagcgtcaaatcacaaaattccaaactcattactactattctcatgtgaccaaacaaatgcatataccaaatacctttctaacgtgattg |
21813010 |
T |
|
| Q |
101 |
ctattataaatcataacttccaaatatgtccccttattgcaattttgatgacaaatgccaaactaactagatgtagatttctacgtaatggatcttagta |
200 |
Q |
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| T |
21813009 |
ctattataaatcataacttccaaatatgtccccttattgcaattttgatgacaaatgccaaactaactagatgtagatttctacgtaatggatcttagta |
21812910 |
T |
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| Q |
201 |
aacaattccaattggccaaata |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
21812909 |
aacaattccaattggccaaata |
21812888 |
T |
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Back To:
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Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 54 - 220
Target Start/End: Original strand, 38587681 - 38587845
Alignment:
| Q |
54 |
aagtgaccaaacaaatgcatataccaaatacctttctaacgtgattgctattataaatcataacttccaaatatgtccccttattgcaattttgatgaca |
153 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
38587681 |
aagtgaccaaacaaatgcatataccaaatacctttctagcgcgattgctactataaatcataacttccaaatctgtccccttgttgcaattttgatgaca |
38587780 |
T |
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| Q |
154 |
aatgccaaactaactagatgtagatttctacgtaatggatcttagtaaacaattccaattggccaaa |
220 |
Q |
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| T |
38587781 |
attgccaaaccaactag-catagctttctatgcaatggatcttagt-aacaattccaattggccaaa |
38587845 |
T |
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