View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_1D_low_2 (Length: 578)
Name: NF1264_1D_low_2
Description: NF1264_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_1D_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 563
Target Start/End: Original strand, 23333285 - 23333847
Alignment:
| Q |
1 |
ggttaattaaaatctggtgctcagcttaattttaatggccaagatagaaagaccccataagaagaaatacggcagtccaaaaagaatccaccacactggt |
100 |
Q |
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| T |
23333285 |
ggttaattaaaatctggtgctcagcttaattttaatggtcaagacagaaagactccataagaaaaaatacagcagtccaaaaagaatccaccacactggt |
23333384 |
T |
|
| Q |
101 |
tgcaaatttgttatactttttgggagtattacacatagctagaggcaaactcctaaaatgttcgcaatttatcttatgccctgtcgtgcgcatcttcgta |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23333385 |
tgcaaatttgttataccttttgggagtattacacatagctagaggcaaactcctaaaatgttcgcaatttatcttatgccccatcgtgcgcatcttcgta |
23333484 |
T |
|
| Q |
201 |
atgacgacattaagcaagccaacgaaatcatttgaattagggattttgtccaacgtaattcagcatattataatgattgtttcatcagaaagcagttgac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |
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| T |
23333485 |
atgacgacattaagcaagccaacgaaatcatttgaattagggattttgtccaacgtaagtcagcatattataatgattgttccatcagaaagcagttgac |
23333584 |
T |
|
| Q |
301 |
atataaaaaatcacttacagttgcggtctcaagctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333585 |
atataaaaaatcacttacagttgcggtctcaagctctgcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaaca |
23333684 |
T |
|
| Q |
401 |
gttcctgaggtaacgacaatgtgtacatttttcctggtaaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctctt |
500 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333685 |
gttcctgaggcaacgacaatgtgtacatttttcctggtaaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctctt |
23333784 |
T |
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| Q |
501 |
tgggggagtactgcttcagctgcattctggcacacaattttatcggtcaacttcgtgatgtcc |
563 |
Q |
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| T |
23333785 |
ggggggagtactgcttcagctgcattccggcacacaattttatcggtcaacttcgttatgtcc |
23333847 |
T |
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