View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_1D_low_23 (Length: 215)
Name: NF1264_1D_low_23
Description: NF1264_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_1D_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 31678297 - 31678504
Alignment:
| Q |
1 |
ttacttgggagaaggatagctcaattttgtttgaagatggctatgaatggagaaagtatggacaaaagaagataatcaatgcaaaatacctcaggtattt |
100 |
Q |
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| T |
31678297 |
ttacttgggagaaggatagctcaattttgattgaagatggttatgaatggagaaagtatggacaaaagaagataatcaatgcaaaatacctcaggtatat |
31678396 |
T |
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| Q |
101 |
atcttcaatttcaacttataataacttactcaaaacctctcnnnnnnnnccttcttctatgacactatttattcttgatgaatgatcataattcaatgtg |
200 |
Q |
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| T |
31678397 |
atattcaatttcaacttataataacttactcaaaatctctcttttttttccttcttctatgacactatttattcttgatgaatgatcataattcaatgtg |
31678496 |
T |
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| Q |
201 |
attcatat |
208 |
Q |
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|||||||| |
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| T |
31678497 |
attcatat |
31678504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 31629097 - 31628902
Alignment:
| Q |
1 |
ttacttgggagaaggatagctcaattttgtttgaagatggctatgaatggagaaagtatggacaaaagaagataatcaatgcaaaatacctcaggtattt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31629097 |
ttacttgggagaaggatagctcaattttgtttgaagatggctatgaatggagaaagtatggacaaaagaagataatcaatgcaaaatacctcagg----t |
31629002 |
T |
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| Q |
101 |
atcttcaatttcaacttataataacttactcaaaacctctc---nnnnnnnnccttcttctatgacactatttattcttgatgaatgatcataattcaat |
197 |
Q |
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||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| |||||| |||||| ||||||||||||| |
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| T |
31629001 |
atcttcaatttcaacttataataacttactcaaaatctcgctctctttttcttcttcttctatgacactattaattcttaatgaataatcataattcaat |
31628902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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