View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1264_1D_low_6 (Length: 404)
Name: NF1264_1D_low_6
Description: NF1264_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_1D_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 35317010 - 35317242
Alignment:
| Q |
14 |
gaaccgaaaaattgagtgaagcaaattggtgacagattgaagtggtgtatcaaagatataaataagatagacacaactcagtgtttggaattatgcaagt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35317010 |
gaaccgaaaaattgagtgaagcaaattggtgacagagtgaagtggtgtatcaaagatataaataagatagacacaactcagtgtttggaattatgcaagt |
35317109 |
T |
|
| Q |
114 |
gagaaagatagaggtgttttttcgatgctccaatagcataataggttgcaatcaacgagctatttgtttcaactttcacaacctacgttgaggttttgct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35317110 |
gagaaagatagaggtgttttttcgatgctccaatagcataataggttgcaatcaacgagctatttgtttcaactttcacaacctacgttgaggttttgct |
35317209 |
T |
|
| Q |
214 |
tcagatagtacctaatgtgtatgaagaaagaga |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
35317210 |
tcagatagtacctaatgtgtatgaagaaagaga |
35317242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 237 - 404
Target Start/End: Original strand, 35317263 - 35317430
Alignment:
| Q |
237 |
aagaaagagagtaaaaagatataaagatcgacacctggagaaagaatcgccggatcgattggggaaaacaaagcaccgttcaattgtggtgattaagaga |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35317263 |
aagaaagagagtaaaaagatataaagatcgacacctggagagagaatcgccggatcgattggggtaaacaaaacaccgttcaattgtggtgattaagaga |
35317362 |
T |
|
| Q |
337 |
gagcggcggcggcgagaggtggtgatggagagcggattgcggtctcgtgtgaggaagattgtgctttc |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35317363 |
gagcggcggcggcgagaggtggtgatggagagcggattgctgtctcgtgtgaggaagattgtgctttc |
35317430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University