View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_1D_low_9 (Length: 302)
Name: NF1264_1D_low_9
Description: NF1264_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_1D_low_9 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 24 - 302
Target Start/End: Original strand, 35879369 - 35879647
Alignment:
| Q |
24 |
ttgaagacactctacaaaatattgatatcaaggtaatcattctcctaacaataattaacaaaattgagcaataaaagaataattaacaaaaaccttaaac |
123 |
Q |
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| T |
35879369 |
ttgaagacactctacaaaatattgatatcaaggtaatcattctcctaacaataattaccaaaattgagcaataaaagaataattaacaaaaaccttaaac |
35879468 |
T |
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| Q |
124 |
ttgttatcttttgagcacttcaaactccaaataataatacatttggtaatctctatgcattttgcaaatatcctaaataagtttcctatgcttctggtgt |
223 |
Q |
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| T |
35879469 |
ttgttatcttttgagcacttcaaactccaaataataatacatttggtaatctctatgcattttgcaaatatactaaataagtttcctatgcttctggttt |
35879568 |
T |
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| Q |
224 |
atgtttgatttcttagggaacaatcaacacatgcaattctaaaagctttgagggatgaaaatctgaatgatccacgaga |
302 |
Q |
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| T |
35879569 |
atgtttgatttcttagagaacaatcaacacatgcaattctaaaagctttgagggatgaaaatctgaatgatccacgaga |
35879647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 35887291 - 35887355
Alignment:
| Q |
234 |
tcttagggaacaatcaacacatgcaattctaaaagctttgagggatgaaaatctgaatgatccac |
298 |
Q |
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| T |
35887291 |
tcttagggaacagtcaacacatgctattctaaaagctccgagagatgaaaatctgaatgatccac |
35887355 |
T |
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