View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_2D_high_11 (Length: 359)
Name: NF1264_2D_high_11
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_2D_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 46549796 - 46549457
Alignment:
| Q |
1 |
aataaatagattgtctgagattaggtcacaataatagctaatgaaatattgcaacccaaccaaaagtttgccgattttgtgatacctgaggcagttgaaa |
100 |
Q |
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| T |
46549796 |
aataaatagattgtctgagattaggtcacaataatagctaatgaaatattgcaacccaaccaaaagtttgccgagtttgtgatacctgaggcagttgaaa |
46549697 |
T |
|
| Q |
101 |
aatgtgactcaatattgtgatatgtaatttggactttaggttggtcaatcaacaccgtatcttgaatctaaacatctggaccatttggtaagaattctgg |
200 |
Q |
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| T |
46549696 |
aatgtgactcaatattgtgatatgtaatttggactttaggttggtcaatcaacgccgtatcttgaatcgaaacatctggaccatttggtaagaattctgg |
46549597 |
T |
|
| Q |
201 |
tttgattgtgtataacattctccatagagaagacatccagggatcaagagtaccttcgtagctacaaataattataccatcattagtcacttaaataaaa |
300 |
Q |
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| T |
46549596 |
tttgattgtgtataacattctccatagagaagacagccagggatcaagagtaccttcgtagctacaaataattataccatcattagtcacttaaataaaa |
46549497 |
T |
|
| Q |
301 |
tatctacatttcaatattaaagaagaagaaagtattaaag |
340 |
Q |
| |
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| T |
46549496 |
tatctacatttcaatattaaagaagaagaaagtattaaag |
46549457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 2 - 340
Target Start/End: Complemental strand, 1026351 - 1026013
Alignment:
| Q |
2 |
ataaatagattgtctgagattaggtcacaataatagctaatgaaatattgcaacccaaccaaaagtttgccgattttgtgatacctgaggcagttgaaaa |
101 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||| | ||| |||| |||||||||||||||||||||||||| |
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| T |
1026351 |
ataaatagattgtctgagattaggtcacaataacagctaatggaatattgcaagccaaccaagaatttaccgagtttgtgatacctgaggcagttgaaaa |
1026252 |
T |
|
| Q |
102 |
atgtgactcaatattgtgatatgtaatttggactttaggttggtcaatcaacaccgtatcttgaatctaaacatctggaccatttggtaagaattctggt |
201 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1026251 |
atgtgactcgatattgtgatatgtaatttggactttaggttggtcaatcaacactgtatcttgaatcgaaacatctggaccatttggtaagaattctggt |
1026152 |
T |
|
| Q |
202 |
ttgattgtgtataacattctccatagagaagacatccagggatcaagagtaccttcgtagctacaaataattataccatcattagtcacttaaataaaat |
301 |
Q |
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| T |
1026151 |
ttgatcgtgtttaaaattctccatagagaagacatccagggatcaagagtaccttcatagctacaaataattataccatcattagtcacttaaataaaat |
1026052 |
T |
|
| Q |
302 |
atctacatttcaatattaaagaagaagaaagtattaaag |
340 |
Q |
| |
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|
| T |
1026051 |
atctacatttcaatattaaagaagaagaaattattaaag |
1026013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 109 - 330
Target Start/End: Complemental strand, 40827981 - 40827760
Alignment:
| Q |
109 |
tcaatattgtgatatgtaatttggactttaggttggtcaatcaacaccgtatcttgaatctaaacatctggaccatttggtaagaattctggtttgattg |
208 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||| | ||||||| |||||||||||| |
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| T |
40827981 |
tcaatattgtgatatgtgatttggactttaggttggtcaatcaacgttgtatcttgaatcaaaacatctggaccactaggtaagagttctggtttgatca |
40827882 |
T |
|
| Q |
209 |
tgtataacattctccatagagaagacatccagggatcaagagtaccttcgtagctacaaataattataccatcattagtcacttaaataaaatatctaca |
308 |
Q |
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||| ||||||||||||||||||||||| ||| ||||||||||||||||| ||||| |||||| |||||||||| |||||| |||||||||||| |||| | |
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| T |
40827881 |
tgtttaacattctccatagagaagacagccaaggatcaagagtaccttcatagctgcaaatagttataccatctttagtcccttaaataaaatctctata |
40827782 |
T |
|
| Q |
309 |
tttcaatattaaagaagaagaa |
330 |
Q |
| |
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| |||||| |||||||||||| |
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| T |
40827781 |
atccaatatcaaagaagaagaa |
40827760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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