View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1264_2D_high_17 (Length: 306)

Name: NF1264_2D_high_17
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1264_2D_high_17
NF1264_2D_high_17
[»] chr1 (1 HSPs)
chr1 (18-304)||(44798726-44799012)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 44799012 - 44798726
Alignment:
Q  18 aatccatgcattgatgattttcccacttttcaaatcaatccgacgtgaaagaagatcagcagaagcaaaagaaacaacactgccaagatcaataccaacg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44799012 aatccatgcattgatgattttcccacttttcaaatcaatccgacgtgaaagaagatcagcagaagcaaaagaaacaacactgccaagatcaataccaacg 44798913  T
Q  118 tggtttccattaatgtcaccaagagaaggatcaaaacttgtatcaaattcaaccgcaaagtaagaatcttgatcagaatgaggaaggcccatgtaaccat 217  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44798912 tggtttccattaatgtcaccaagagaaggatcaaaactcgtatcaaattcaaccgcaaagtaagaatcttgatcagaatgaggaaggcccatgtaaccat 44798813  T
Q  218 tagagagagacgagaaatcagtggttgatgaaatgagaaaagcaatgccatcggaagaagaaggacaagaaggtgaagaaaggattg 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44798812 tagagagagacgagaaatcagtggttgatgaaatgagaaaagcaatgccatcggaagaagaaggacaagaaggtgaagaaaggattg 44798726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University