View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1264_2D_high_19 (Length: 306)

Name: NF1264_2D_high_19
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1264_2D_high_19
NF1264_2D_high_19
[»] chr5 (4 HSPs)
chr5 (108-287)||(13026567-13026746)
chr5 (108-287)||(13096751-13096930)
chr5 (19-87)||(13024410-13024478)
chr5 (21-87)||(13094596-13094662)


Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 108 - 287
Target Start/End: Original strand, 13026567 - 13026746
Alignment:
Q  108 agttacattcttcatactctcaccaaccgattttgtaagagtaagttaggactaatataaagtcttacggtggctacaagttcacaatattcgacttcaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13026567 agttacattcttcatactctcaccaaccgattttgtaagagtaagttaggactaatataaagtcttacggtggctacaagttcacaatattcgacttcaa 13026666  T
Q  208 acgaggagggagatacaatggtttatttctttgacttctatgaaatgggagagttgtcagggaagatacaccaactagtg 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  13026667 acgaggagggagatacaatggtttatttctttgacttctatgaaatgggagagttgtcaaggaagatacaccagctagtg 13026746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 108 - 287
Target Start/End: Original strand, 13096751 - 13096930
Alignment:
Q  108 agttacattcttcatactctcaccaaccgattttgtaagagtaagttaggactaatataaagtcttacggtggctacaagttcacaatattcgacttcaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13096751 agttacattcttcatactctcaccaaccgattttgtaagagtaagttaggactaatataaagtcttacggtggctacaagttcacaatattcgacttcaa 13096850  T
Q  208 acgaggagggagatacaatggtttatttctttgacttctatgaaatgggagagttgtcagggaagatacaccaactagtg 287  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  13096851 acgaggagagagatacaatgatttatttctttgacttctatgaaatgggagagttgtcaaggaagatacaccagctagtg 13096930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 13024410 - 13024478
Alignment:
Q  19 ccatttatatacacgcaccaagctacattgataaaagataaggtatgattaatgtttataatgagatgt 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13024410 ccatttatatacacgcaccaagctacattgataaaagataaggtatgattagtgtttataatgagatgt 13024478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 13094596 - 13094662
Alignment:
Q  21 atttatatacacgcaccaagctacattgataaaagataaggtatgattaatgtttataatgagatgt 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13094596 atttatatacacgcaccaagctacattgataaaagataaggtatgattagtgtttataatgagatgt 13094662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University