View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_2D_low_18 (Length: 362)
Name: NF1264_2D_low_18
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_2D_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 66 - 266
Target Start/End: Original strand, 9799142 - 9799342
Alignment:
| Q |
66 |
gtatattctgttattcaatgataagagttagttacaatatatgtttatataggggctatctaactgtataacatctgtaactaacaaactctataagctg |
165 |
Q |
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| T |
9799142 |
gtatattctgttattcaatgataagagttagttacaatatatgtttatataggggctatctaactgtataacatctgtaactaacaaactctataagctg |
9799241 |
T |
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| Q |
166 |
tgctattctatgtaaggtacttggtaaaggaaacttagagcacaagttaatttgcacaactagttaactatggtgtaaccagaagtttaacagatagtat |
265 |
Q |
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| T |
9799242 |
tgctattctatgtaaggtacttggtaaaggaaacttagagcacaagttaatttgcacaactagttaactatggtgtaaccagaagtttaacagatagtat |
9799341 |
T |
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| Q |
266 |
a |
266 |
Q |
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| T |
9799342 |
a |
9799342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 66 - 226
Target Start/End: Original strand, 9790124 - 9790287
Alignment:
| Q |
66 |
gtatattctgttattcaatgataagagttagttacaatatatgtttatataggggctat---ctaactgtataacatctgtaactaacaaactctataag |
162 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| || ||| |||||||||||||| |||||||| |||||||||||||| |
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| T |
9790124 |
gtatattctgttattcaatgatgtgagttagttacaatatatgtttatatagaggatatgatctaactgtataacagctgtaactgacaaactctataag |
9790223 |
T |
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| Q |
163 |
ctgtgctattctatgtaaggtacttggtaaaggaaacttagagcacaagttaatttgcacaact |
226 |
Q |
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| T |
9790224 |
ttgtgctattctatgtagggtacatggtaagggaaacttaaagcacaagttaacttgcacaact |
9790287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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