View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1264_2D_low_20 (Length: 360)
Name: NF1264_2D_low_20
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_2D_low_20 |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0642 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 6869 - 7222
Alignment:
| Q |
1 |
aagttgctgcaaaaacaaagattttaactgccatacacatatcagaacttcagaagcacttggattcctgctgatagaaaattagtggnnnnnnntatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
6869 |
aagttgctgcaaaaacaaagattttaactgccatacacatatcaaaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatct |
6968 |
T |
|
| Q |
101 |
gaaatgcatcc--------------taaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttcgtaatattagttatgccgaca |
186 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
6969 |
gaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttggtaatattagttatgccgaca |
7068 |
T |
|
| Q |
187 |
tgtcttaagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatgt |
286 |
Q |
| |
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| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7069 |
tctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatgt |
7168 |
T |
|
| Q |
287 |
aagggctgggttaactattttggatacaaatttgtatttgcaccttttgctgga |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7169 |
aagggctgggttaactattttggatacaaatttgtatttgcaccttttgctgga |
7222 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 16782 - 17135
Alignment:
| Q |
1 |
aagttgctgcaaaaacaaagattttaactgccatacacatatcagaacttcagaagcacttggattcctgctgatagaaaattagtggnnnnnnntatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
16782 |
aagttgctgcaaaaacaaagattttaactgccatacacatatcaaaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatct |
16881 |
T |
|
| Q |
101 |
gaaatgcatcc--------------taaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttcgtaatattagttatgccgaca |
186 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16882 |
gaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttggtaatattagttatgccgaca |
16981 |
T |
|
| Q |
187 |
tgtcttaagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatgt |
286 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16982 |
tctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatgt |
17081 |
T |
|
| Q |
287 |
aagggctgggttaactattttggatacaaatttgtatttgcaccttttgctgga |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17082 |
aagggctgggttaactattttggatacaaatttgtatttgcaccttttgctgga |
17135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 22200 - 21847
Alignment:
| Q |
1 |
aagttgctgcaaaaacaaagattttaactgccatacacatatcagaacttcagaagcacttggattcctgctgatagaaaattagtggnnnnnnntatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
22200 |
aagttgctgcaaaaacaaagattttaactgccatacacatatcaaaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatct |
22101 |
T |
|
| Q |
101 |
gaaatgcatcc--------------taaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttcgtaatattagttatgccgaca |
186 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
22100 |
gaaatgcatccaccgcaaagagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttggtaatattagttatgccgaca |
22001 |
T |
|
| Q |
187 |
tgtcttaagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatgt |
286 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22000 |
tctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatgt |
21901 |
T |
|
| Q |
287 |
aagggctgggttaactattttggatacaaatttgtatttgcaccttttgctgga |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21900 |
aagggctgggttaactattttggatacaaatttgtatttgcaccttttgctgga |
21847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 51082 - 50727
Alignment:
| Q |
1 |
aagttgctgcaaaaacaaagattttaactgccatacacatatcagaacttcagaagcacttggattcctgctgatagaaaattagtggnnnnnnntatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51082 |
aagttgctgcaaaaacaaagattttaactgccatacacatatcagaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatct |
50983 |
T |
|
| Q |
101 |
gaaatgcatcc--------------taaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttcgtaatattagttatgccgaca |
186 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
50982 |
gaaatgcatccaccgcaaagattcctaaaatgccatggatcatgattgaagattcaaagtaatcaaggagcattatttggtaatattagttatgtcgaca |
50883 |
T |
|
| Q |
187 |
tgtcttaagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatgt |
286 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50882 |
tctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatgt |
50783 |
T |
|
| Q |
287 |
aagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggatt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50782 |
aagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggatt |
50727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 44498486 - 44498841
Alignment:
| Q |
1 |
aagttgctgcaaaaacaaagattttaactgccatacacatatcagaacttcagaagcacttggattcctgctgatagaaaattagtggnnnnnnntatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44498486 |
aagttgctgcaaaaacaaagattttaactgccatacacatatcagaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatct |
44498585 |
T |
|
| Q |
101 |
gaaatgcatcc--------------taaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttcgtaatattagttatgccgaca |
186 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
44498586 |
gaaatgcatccaccgcaaagattcctaaaatgccatggatcatgattgaagattcaaagtaatcaaggagcattatttggtaatattagttatgtcgaca |
44498685 |
T |
|
| Q |
187 |
tgtcttaagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatgt |
286 |
Q |
| |
|
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498686 |
tctctttagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatgt |
44498785 |
T |
|
| Q |
287 |
aagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggatt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498786 |
aagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggatt |
44498841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 3381088 - 3381430
Alignment:
| Q |
1 |
aagttgctgcaaaaacaaagattttaactgccatacacatatcagaacttcagaagcacttggattcctgctgatagaaaattagtggnnnnnnntatct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3381088 |
aagttgctgcaaaaacaaagattttaactgccaaacacatatcagaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatct |
3381187 |
T |
|
| Q |
101 |
gaaatgcatcc-----------taaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattatttcgtaatattagttatgccgacatgt |
189 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
3381188 |
gaaatgcatccacctcgagtcctaaaatgccatggatcgtgattgaagattcaaagtaatcaaggagcattgtttggtaatattagttatgccgacatgt |
3381287 |
T |
|
| Q |
190 |
cttaagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatgtaag |
289 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
3381288 |
ctttagtgaaaccattttggctatctaattgtttgttg----------agttaaaattttccatttatggagttgtcatattttgtatgaaatatgtaag |
3381377 |
T |
|
| Q |
290 |
ggctgggttaactattttggatacaaatttgtatttgcaccttttgctggatt |
342 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3381378 |
ggctgggttaactattttagatacaaatttgtatttgcaccttttgctggatt |
3381430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 186 - 342
Target Start/End: Complemental strand, 30112048 - 30111893
Alignment:
| Q |
186 |
atgtcttaagtgaaaccattttggctatctaattgtttgttgtccctttcttagttaaaattttccatttatggagttgtcatattttgtgtgaattatg |
285 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| |||||| ||||||| ||||| |||||||||||||||| | |||||||||||||||||||| ||| |
|
|
| T |
30112048 |
atgtctttagtgaaatcattttggctatctaatgttttgttcaccctttcgtagttgaaattttccatttatg-atttgtcatattttgtgtgaataatg |
30111950 |
T |
|
| Q |
286 |
taagggctgggttaactattttggatacaaatttgtatttgcaccttttgctggatt |
342 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
30111949 |
taagggctgagttaactattttggatacaaatttgtatttgtaacttttgctggatt |
30111893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 88
Target Start/End: Complemental strand, 30112170 - 30112132
Alignment:
| Q |
50 |
tcagaagcacttggattcctgctgatagaaaattagtgg |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30112170 |
tcagaagcacttggattcctgctgatagaaaattagtgg |
30112132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 15709025 - 15709112
Alignment:
| Q |
1 |
aagttgctgcaaaaacaaagattttaactgccatacacatatcagaacttcagaagcacttggattcctgctgatagaaaattagtgg |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15709025 |
aagttgctgcaaaaacaaagattttaactgccatacacatatcaaaacttcagaagcacttggattcctgctgatagaaaattagtgg |
15709112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26795769 - 26795723
Alignment:
| Q |
1 |
aagttgctgcaaaaacaaagattttaactgccatacacatatcagaa |
47 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26795769 |
aagttgctgcaaaaacaaaggttttaactgccatacacatatcagaa |
26795723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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