View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_2D_low_25 (Length: 358)
Name: NF1264_2D_low_25
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_2D_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 92 - 340
Target Start/End: Original strand, 3895271 - 3895519
Alignment:
| Q |
92 |
gagaatgctggagagaaggctagagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaaggagctg |
191 |
Q |
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| T |
3895271 |
gagagtgctggggagaaagctagagattatgcttatgatgcaaaggaaagaaccaaggaaggagcgagttacatggctgataagacaaaagaaggagctg |
3895370 |
T |
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| Q |
192 |
agaaaacggcagagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtggga |
291 |
Q |
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| T |
3895371 |
agaaaacggcggagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaagacggcccaaggagcgtggga |
3895470 |
T |
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| Q |
292 |
gacagcgaaggatgcaacacaaaagatcaaggagactgttgttggaaag |
340 |
Q |
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| T |
3895471 |
gacagcgaaggatgcaacacaaaagatcaaggagactgttgttggaaag |
3895519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 3895048 - 3895197
Alignment:
| Q |
1 |
tgcttatgaggtaaaagacagaacaaatgaagcagcaggttctgtgtgggataaagccagagaaggaacaaatagggctgcagagaaggctgagaatgct |
100 |
Q |
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| T |
3895048 |
tgcttatgaggtaaaagacagaaccaatgaagcagcaggttctgtgtgggataaagccagagaaggaacaaatagggctgcagagaaggctgagaatgct |
3895147 |
T |
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| Q |
101 |
ggagagaaggctagagattatgcttatgatgcaaaggaaagaaccaagga |
150 |
Q |
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| T |
3895148 |
ggagagaaggctagagattatgcttatgatgcaaaggagagaacaaagga |
3895197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 3894962 - 3895079
Alignment:
| Q |
35 |
gcaggttctgtgtgggataaagccagagaaggaacaaatagggctgcagagaaggctgagaatgctggagagaaggctagagattatgcttatgatgcaa |
134 |
Q |
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|||||||| ||||||| ||||||| |||||||||| | || |||||||||||||| ||||||||||||||||| |||||||| ||||||||||| | || |
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| T |
3894962 |
gcaggttcaatgtgggagaaagccaaagaaggaacagacagagctgcagagaaggcagagaatgctggagagaaagctagagactatgcttatgaggtaa |
3895061 |
T |
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| Q |
135 |
aggaaagaaccaaggaag |
152 |
Q |
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| T |
3895062 |
aagacagaaccaatgaag |
3895079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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