View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_2D_low_28 (Length: 330)
Name: NF1264_2D_low_28
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_2D_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 34931845 - 34932171
Alignment:
| Q |
1 |
agctttgcactggtgaagcaactaggtctttcaggtacttattcaaggataatttgaattcaaaactcaatgcaatttcttcactttgatcagtgtaaat |
100 |
Q |
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| T |
34931845 |
agcttttcactggtgaagcaactaagtctttcaggtacttattcaaggataatttgaattcaaaactcaatgcaatttcttcactttgatcagtgtaaat |
34931944 |
T |
|
| Q |
101 |
ttctacaatattatcaatcttcaagttgtcaatcaaaactgctcctcttcgcctgattttgaagaaagtnnnnnnnnnnnnnnnnnnnnnnntatgtggc |
200 |
Q |
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| T |
34931945 |
ttctacaatattatcaatcttcaagttgtcaatcaaaactgcacctcttcgcctgattttgaagaaagtacacacacacacagacacacacatatgtgac |
34932044 |
T |
|
| Q |
201 |
tttattgaagcttcattagaaatattagtacatgagaaataatagttttagacttaccttaatgtgtttaagtgtagcttaaaagttttattcaataagg |
300 |
Q |
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| T |
34932045 |
-ttattgaagcttcattagaaatattagtacatgagaaataatagttttagacttaccttaatgtgtttaagtgtagcttaaaagttttattcaataagg |
34932143 |
T |
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| Q |
301 |
tgtcatttccaacctcgtagtattatct |
328 |
Q |
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| T |
34932144 |
tgtcatttccaacctcgtagtataatct |
34932171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 34926931 - 34927099
Alignment:
| Q |
1 |
agctttgcactggtgaagcaactaggtctttcaggtacttattcaaggataatttgaattcaaaactcaatgcaatttcttcactttgatcagtgtaaat |
100 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| |||| |
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| T |
34926931 |
agcttttcactggtgaagcaactaattctttcaggtacttattcaaggataatttgaattcaaaattcaaggcaatttgttcactttgatcagtgaaaat |
34927030 |
T |
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| Q |
101 |
ttctacaatattatcaatcttcaagttgtcaatcaaaactgctcctcttcgcctgattttgaagaaagt |
169 |
Q |
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| T |
34927031 |
ttcaacaatgttatcaatcttcaaattgtcaatcaaaactgcacctcttcgcctgattttgaagaaagt |
34927099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 202 - 328
Target Start/End: Original strand, 34927125 - 34927251
Alignment:
| Q |
202 |
ttattgaagcttcattagaaatattagtacatgagaaataatagttttagacttaccttaatgtgtttaagtgtagcttaaaagttttattcaataaggt |
301 |
Q |
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||||| |||||||| ||||||||||||||| ||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||| || |||||| |
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| T |
34927125 |
ttattaaagcttcactagaaatattagtacttgaaaaataatagttttagacttaccttaacgtgtttaggtgtagcttaaaagttttatccagtaaggt |
34927224 |
T |
|
| Q |
302 |
gtcatttccaacctcgtagtattatct |
328 |
Q |
| |
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||||||||||| |||||||||| |||| |
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| T |
34927225 |
gtcatttccaaactcgtagtataatct |
34927251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 34896663 - 34896819
Alignment:
| Q |
1 |
agctttgcactggtgaagcaactaggtctttcaggtacttattcaaggataatttgaattcaaaactcaatgcaatttcttcactttgatcagtgtaaat |
100 |
Q |
| |
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|||||| |||||| |||||||| | ||||| ||||| ||||| |||||||||||||||||| |||| ||||| | |||||||||| || || ||| |
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| T |
34896663 |
agcttttcactggcgaagcaaccaaatctttgaggtatgcattcacggataatttgaattcaaacttcaaagcaatctgttcactttgaccactgataat |
34896762 |
T |
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| Q |
101 |
ttctacaatattatcaatcttcaagttgtcaatcaaaactgctcctcttcgcctgat |
157 |
Q |
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||| |||| |||||||||||||| ||||||| ||||||||| |||||| ||||||| |
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| T |
34896763 |
ttcatcaatgttatcaatcttcaaattgtcaaccaaaactgcacctctttgcctgat |
34896819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 12 - 157
Target Start/End: Original strand, 34910171 - 34910316
Alignment:
| Q |
12 |
ggtgaagcaactaggtctttcaggtacttattcaaggataatttgaattcaaaactcaatgcaatttcttcactttgatcagtgtaaatttctacaatat |
111 |
Q |
| |
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|||||||| |||| ||||||||||| | |||||| ||||||||||||||||| |||| ||||| ||||||| || || || |||||| |||| | |
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| T |
34910171 |
ggtgaagctactaaatctttcaggtattcattcaatgataatttgaattcaaagttcaaagcaatagattcacttggagcactgagaatttcatcaatgt |
34910270 |
T |
|
| Q |
112 |
tatcaatcttcaagttgtcaatcaaaactgctcctcttcgcctgat |
157 |
Q |
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||||||||||||| ||||||| ||||||||| |||||| ||||||| |
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| T |
34910271 |
tatcaatcttcaaattgtcaaccaaaactgcacctctttgcctgat |
34910316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 34920111 - 34920260
Alignment:
| Q |
8 |
cactggtgaagcaactaggtctttcaggtacttattcaaggataatttgaattcaaaactcaatgcaatttcttcactttgatcagtgtaaatttctaca |
107 |
Q |
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|||||| || || |||| |||||| ||||| |||||| |||||||||||||||||| ||| ||||| || |||||| ||||| || |||||| || |
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| T |
34920111 |
cactggcgatgctactaagtctttgaggtatgcattcaatgataatttgaattcaaaattcatagcaatctcctcacttggatcactgataatttcatca |
34920210 |
T |
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| Q |
108 |
atattatcaatcttcaagttgtcaatcaaaactgctcctcttcgcctgat |
157 |
Q |
| |
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|| |||||||||||||| ||||||| ||||||||| ||||| ||||||| |
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| T |
34920211 |
atgttatcaatcttcaaattgtcaaccaaaactgcacctctctgcctgat |
34920260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 312
Target Start/End: Original strand, 34897479 - 34897587
Alignment:
| Q |
208 |
aagcttcattagaaatattagtacatgagaaataatagttttagactta----ccttaatgtgtttaagtgtagcttaaaagttttattcaataaggtgt |
303 |
Q |
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| T |
34897479 |
aagcttcattagcagtattaagacttgacaaataatagttttagacttagttaccttaacgtgtttaggtgtagcttgaaagtttcatgcataaaagtgt |
34897578 |
T |
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| Q |
304 |
catttccaa |
312 |
Q |
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| T |
34897579 |
catttccaa |
34897587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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