View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1264_2D_low_30 (Length: 323)
Name: NF1264_2D_low_30
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_2D_low_30 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 21 - 302
Target Start/End: Complemental strand, 12613532 - 12613251
Alignment:
| Q |
21 |
catgagctatttcaatgagttgagatgatgggaacttgttcaagctaccaaaacttacatagagaacagaattttctttcttggaattaagccatttaaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12613532 |
catgagctatttcaatgagttgagatgatgggaacttgttcatgctaccaaaacttacatagagaacagaattctctttcttggaattaagccatttaaa |
12613433 |
T |
|
| Q |
121 |
caaactactatctccttctacatttgtgtcacctctttctgccttatcagaaacatcttggtttgcccataatgaaactggtcctaagctccaacacttt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12613432 |
caaactactatctccttctacatttgtgtcacctctttctgccttatcagaaacatcttggtttgcccataatgaaactggtcctaagctccaacacttt |
12613333 |
T |
|
| Q |
221 |
gttccaaatgcattcttgtaatgctcctcataagccccctccaaaccgtaaaagctattgaatactgcaccatggctttttc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12613332 |
gttccaaatgcattcttgtaatgctcctcataggccccctccaaaccgtaaaagctattgaatactgcaccatagctttttc |
12613251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 166; Significance: 8e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 21 - 293
Target Start/End: Original strand, 17572698 - 17572973
Alignment:
| Q |
21 |
catgagctatttcaatgagttgagatgatgggaacttgttcaagctaccaaaacttacatagagaacagaattttctttcttggaattaagccatttaaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
17572698 |
catgagctatttcaatgagttgagatgttgggaacttgtttaagctgccaaaacttacatagagaacagaattctctttcttggagtttagccatttaag |
17572797 |
T |
|
| Q |
121 |
caaactactatctccttct---acatttgtgtcacctctttctgccttatcagaaacatcttggtttgcccataatgaaactggtcctaagctccaacac |
217 |
Q |
| |
|
||| ||||| ||||||| || | |||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17572798 |
caagtcactatttccttcttctactctcttgtctcctctttcttccttatcagaaacatcttgatttgcccataatgaaactggtcctaagctccaacac |
17572897 |
T |
|
| Q |
218 |
tttgttccaaatgcattcttgtaatgctcctcataagccccctccaaaccgtaaaagctattgaatactgcaccat |
293 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||| |||||||| |||| |
|
|
| T |
17572898 |
tttgttccaaatgcattcttgtaatgctcttcataagcaccctcgaaatcgtaaaagctattaaatactgcgccat |
17572973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 21 - 298
Target Start/End: Complemental strand, 17620014 - 17619734
Alignment:
| Q |
21 |
catgagctatttcaatgagttgagatgatgggaacttgttcaagctaccaaaacttacatagagaacagaattttctttcttggaattaagccatttaaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||| ||||||||| ||||||||||| | |||||||||| |
|
|
| T |
17620014 |
catgagctatttcaatgagttgagatggtgggaacttgtttaagctgccaaaacttacatagataacagaattctctttcttggagtgcagccatttaag |
17619915 |
T |
|
| Q |
121 |
caa---actactatctccttctacatttgtgtcacctctttctgccttatcagaaacatcttggtttgcccataatgaaactggtcctaagctccaacac |
217 |
Q |
| |
|
||| |||| | || ||||||| |||| || ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| || ||| ||| |
|
|
| T |
17619914 |
caagtcactatttccttcttctacttttgcctctcctctttcttccttatcagaaacatcttgatttgcccataatgaaactggtcctatgccccagcac |
17619815 |
T |
|
| Q |
218 |
tttgttccaaatgcattcttgtaatgctcctcataagccccctccaaaccgtaaaagctattgaatactgcaccatggctt |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||| || |||| ||||| |||| |||||||| |||| |
|
|
| T |
17619814 |
tttgttccaaatgcattcttgtaatgctcctcataagcaccctcgaaatcggaaaaactattaaatattgcaccatagctt |
17619734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 17581794 - 17581883
Alignment:
| Q |
43 |
agatgatgggaacttgttcaagctaccaaaacttacatagagaacagaattttctttcttggaattaagccatttaaacaaactactatc |
132 |
Q |
| |
|
||||| ||| |||||||| ||||| ||||||||||||||||||||| |||| | ||||||||| ||||||||||||| ||| | |||||| |
|
|
| T |
17581794 |
agatgttggaaacttgtttaagctgccaaaacttacatagagaacaaaattctatttcttggatttaagccatttaagcaagccactatc |
17581883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 21 - 293
Target Start/End: Original strand, 14710295 - 14710570
Alignment:
| Q |
21 |
catgagctatttcaatgagttgagatgatgggaacttgttcaagctaccaaaacttacatagagaacagaattttctttcttggaattaagccatttaaa |
120 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||| ||||||||||||||| |||||||| || ||||||||||||| |
|
|
| T |
14710295 |
catgagctatttcaatgagttgagatgttgggaacttgtttaagctgccaaaacttagatagagaacagaattctctttcttagagttaagccatttaag |
14710394 |
T |
|
| Q |
121 |
caaactactatctccttct---acatttgtgtcacctctttctgccttatcagaaacatcttggtttgcccataatgaaactggtcctaagctccaacac |
217 |
Q |
| |
|
||| | ||| ||||||| || |||||| | || ||||| | || || ||||||||||| ||||||||||||||||||||||||| || ||||||| |
|
|
| T |
14710395 |
caagtcattatttccttcttctacttttgtgcctccactttcgtcgttgtcggaaacatcttgatttgcccataatgaaactggtcctatgccccaacac |
14710494 |
T |
|
| Q |
218 |
tttgttccaaatgcattcttgtaatgctcctcataagccccctccaaaccgtaaaagctattgaatactgcaccat |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||| | |||||| |
|
|
| T |
14710495 |
tttgttccaaatgcattcttgtaatgctcctcataagcaccctcgaaatcgtaaaagctattaaatattccaccat |
14710570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 14756468 - 14756402
Alignment:
| Q |
53 |
aacttgttcaagctaccaaaacttacatagagaacagaattttctttcttggaattaagccatttaa |
119 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
14756468 |
aacttgttctagctgccaaaacttacatagagaacagaattctatttcttggatttaagccatttaa |
14756402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 14869819 - 14869721
Alignment:
| Q |
21 |
catgagctatttcaatgagttgagatgatgggaacttgttcaagctaccaaaacttacatagagaacagaattttctttcttggaattaagccatttaa |
119 |
Q |
| |
|
||||||||||||||| || |||| | ||||||||||||| ||| |||||||| |||||||||||||||| |||||||| |||| |||||| |||| |
|
|
| T |
14869819 |
catgagctatttcaacaagctgaggagtagggaacttgttcatgctcccaaaactaacatagagaacagaatcatctttcttagaatcaagccacttaa |
14869721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 252
Target Start/End: Complemental strand, 14869673 - 14869585
Alignment:
| Q |
164 |
ttatcagaaacatcttggtttgcccataatgaaactggtcctaagctccaacactttgttccaaatgcattcttgtaatgctcctcata |
252 |
Q |
| |
|
||||| ||| |||||||||| |||||| ||||||||||| | |||||||| ||| ||||| | ||| ||||||||||||||||||| |
|
|
| T |
14869673 |
ttatccgaatcatcttggttcacccatagagaaactggtcccaggctccaactcttggttcccattgctgtcttgtaatgctcctcata |
14869585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 16908846 - 16908944
Alignment:
| Q |
21 |
catgagctatttcaatgagttgagatgatgggaacttgttcaagctaccaaaacttacatagagaacagaattttctttcttggaattaagccatttaa |
119 |
Q |
| |
|
||||||||||||||| ||||||| | ||||||||||||| ||| |||||||| ||||| |||||||||| | |||||| |||| |||||| |||| |
|
|
| T |
16908846 |
catgagctatttcaacaagttgaggagtagggaacttgttcatgctcccaaaactaacataaagaacagaatcatatttctttgaatcaagccacttaa |
16908944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 192
Target Start/End: Original strand, 53896293 - 53896332
Alignment:
| Q |
153 |
ctctttctgccttatcagaaacatcttggtttgcccataa |
192 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
53896293 |
ctctctctgccttatcagaaacatcttagtttgcccataa |
53896332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 53896160 - 53896198
Alignment:
| Q |
22 |
atgagctatttcaatgagttgagatgatgggaacttgtt |
60 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
53896160 |
atgagctatttcaatgagttgagatattgggaacttgtt |
53896198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University