View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1264_2D_low_32 (Length: 322)

Name: NF1264_2D_low_32
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1264_2D_low_32
NF1264_2D_low_32
[»] chr3 (7 HSPs)
chr3 (1-306)||(31825549-31825854)
chr3 (1-306)||(24923452-24923757)
chr3 (1-302)||(24919878-24920179)
chr3 (1-302)||(24981935-24982236)
chr3 (1-306)||(25084923-25085228)
chr3 (1-302)||(24497251-24497552)
chr3 (1-306)||(21584589-21584894)
[»] chr7 (4 HSPs)
chr7 (1-305)||(10575273-10575577)
chr7 (2-306)||(39954838-39955142)
chr7 (49-279)||(354316-354547)
chr7 (149-218)||(10580760-10580829)
[»] chr8 (1 HSPs)
chr8 (1-306)||(14261024-14261329)
[»] chr2 (1 HSPs)
chr2 (10-218)||(41027545-41027753)
[»] chr4 (3 HSPs)
chr4 (25-293)||(53328612-53328880)
chr4 (10-239)||(22898505-22898734)
chr4 (10-239)||(22950173-22950402)
[»] chr5 (1 HSPs)
chr5 (13-173)||(26358552-26358712)


Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 31825549 - 31825854
Alignment:
Q  1 caacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31825549 caacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtga 31825648  T
Q  101 ccgcatcacggatgacattctccaagaagatcttcaagacacctatggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31825649 ccgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaa 31825748  T
Q  201 tcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttacca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31825749 tcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttacca 31825848  T
Q  301 cgacct 306  Q
    ||||||    
T  31825849 cgacct 31825854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 24923452 - 24923757
Alignment:
Q  1 caacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtga 100  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || || |||||||||||||| ||||||||||||||||| |    
T  24923452 caacctccaaatccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtatgtca 24923551  T
Q  101 ccgcatcacggatgacattctccaagaagatcttcaagacacctatggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaa 200  Q
    | |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||| |||||    
T  24923552 cagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccacctcttcttgccaa 24923651  T
Q  201 tcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttacca 300  Q
    ||||||||| |||||||| ||||||||||||||||| || || ||||| ||||| ||||| ||||||||||||||||| || ||||||||||||||||||    
T  24923652 tcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctccctttccgagtcccttacctcccttacca 24923751  T
Q  301 cgacct 306  Q
    ||||||    
T  24923752 cgacct 24923757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 24919878 - 24920179
Alignment:
Q  1 caacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||||||||||||||||||||||||||| |    
T  24919878 caacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtca 24919977  T
Q  101 ccgcatcacggatgacattctccaagaagatcttcaagacacctatggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaa 200  Q
    | |||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  24919978 cagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccacctcttcttgccaa 24920077  T
Q  201 tcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttacca 300  Q
    ||||||||| |||||||| ||||||||||||||||| || || |||||||| || ||||| ||||||||||||||||| |  |||||||||||||| |||    
T  24920078 tcgacgaattgcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctccctttcccaatcccttacctccctttcca 24920177  T
Q  301 cg 302  Q
    ||    
T  24920178 cg 24920179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 24982236 - 24981935
Alignment:
Q  1 caacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtga 100  Q
    ||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |    
T  24982236 caaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaa 24982137  T
Q  101 ccgcatcacggatgacattctccaagaagatcttcaagacacctatggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaa 200  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||    
T  24982136 ctgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacctcttcttgccaa 24982037  T
Q  201 tcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttacca 300  Q
    ||||||||| |||||||| ||||||||||||||||| || || |||||||| || ||||| |||||||||||||||||||| ||||||||||| || |||    
T  24982036 tcgacgaatagcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctccctttcctagtcccttacctccttttcca 24981937  T
Q  301 cg 302  Q
    ||    
T  24981936 cg 24981935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 25085228 - 25084923
Alignment:
Q  1 caacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtga 100  Q
    |||||||| || |||||||||||||||||||| |||||||||||||||||||||||||| || || || ||||||||||| ||||||||||||||||| |    
T  25085228 caacctccaaaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaa 25085129  T
Q  101 ccgcatcacggatgacattctccaagaagatcttcaagacacctatggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaa 200  Q
    | ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  25085128 ctgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacctcttctcgccaa 25085029  T
Q  201 tcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttacca 300  Q
    || ||||||||||||||| ||||||||||||||||| || || ||||| ||||| ||||| ||||||||||||||||| |  |||||||||||||| |||    
T  25085028 tctacgaatggcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctccctttcccaatcccttacctccctttcca 25084929  T
Q  301 cgacct 306  Q
    ||||||    
T  25084928 cgacct 25084923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 24497251 - 24497552
Alignment:
Q  1 caacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtga 100  Q
    |||||||| || ||||||||||||||||| || |||||||||||||||||||||||||| || || || ||||||||||| ||||||||||||||||| |    
T  24497251 caacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaa 24497350  T
Q  101 ccgcatcacggatgacattctccaagaagatcttcaagacacctatggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaa 200  Q
    | ||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||    
T  24497351 ctgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaacaccacctcttcttgccaa 24497450  T
Q  201 tcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttacca 300  Q
    ||||||||| |||||||| |||||||||||||||||||| || ||||| || || ||||| ||||||||||||||||| || |||||||||||||| |||    
T  24497451 tcgacgaatagcaggcttggtgataccctggatgttgtcacgaagaaccttcctatgcctctttgcacctccctttccgagtcccttacctccctttcca 24497550  T
Q  301 cg 302  Q
    ||    
T  24497551 cg 24497552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 21584589 - 21584894
Alignment:
Q  1 caacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtga 100  Q
    ||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||| || || || ||||||||||| || ||||||||||| || |    
T  21584589 caacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtgtacgtaa 21584688  T
Q  101 ccgcatcacggatgacattctccaagaagatcttcaagacacctatggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaa 200  Q
    |||||||||| || |||||||||||||| ||||| |  || ||| | ||||| ||||| |||||||||||||| ||||| ||||||||||||||||||||    
T  21584689 ccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacctcttctcgccaa 21584788  T
Q  201 tcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttacca 300  Q
    ||||||||| || ||||| ||||| ||||| ||||| || || |||||||| ||||| || |||||||||||||||||||| |||||||||||||| |||    
T  21584789 tcgacgaatcgctggcttggtgattccctgaatgttatcacgaagaactttcctgtgtctctttgcacctccctttcctagtcccttacctccctttcca 21584888  T
Q  301 cgacct 306  Q
    ||||||    
T  21584889 cgacct 21584894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 10575577 - 10575273
Alignment:
Q  1 caacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtga 100  Q
    ||||| ||||| ||||||||||||||||| || ||||| |  || || ||||||||||| || || || || |||||||| || ||||||||||| || |    
T  10575577 caaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaagtaa 10575478  T
Q  101 ccgcatcacggatgacattctccaagaagatcttcaagacacctatggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaa 200  Q
    | ||||| |  || ||||||||||||||||||||||| |||||| | ||||| ||||||||||| |||||||| || |||||||| ||||||||||||||    
T  10575477 cagcatctcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacctcctcttctcgccaa 10575378  T
Q  201 tcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttacca 300  Q
    ||||||||| || ||||| ||||| || ||||||||||| |||||||| || |  || || |||||||| ||||||||||  || ||||||||||| |||    
T  10575377 tcgacgaatcgctggctttgtgattccttggatgttgtcacggagaaccttgcgatgtctctttgcacccccctttcctaatcctttacctccctttcca 10575278  T
Q  301 cgacc 305  Q
    |||||    
T  10575277 cgacc 10575273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 2 - 306
Target Start/End: Original strand, 39954838 - 39955142
Alignment:
Q  2 aacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgac 101  Q
    |||| ||||| || ||||| || |||||||||||||| | |||||| ||||||||||| |||||||| || ||||||||||| ||||||||||| || ||    
T  39954838 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 39954937  T
Q  102 cgcatcacggatgacattctccaagaagatcttcaagacacctatggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaat 201  Q
     |||||||| || |||||||| |  |||||||| |  |||||    || ||||| ||||| | ||| ||||| |||||||||||||| |  || || |      
T  39954938 agcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccaccacgccttgcaaga 39955037  T
Q  202 cgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttaccac 301  Q
    |||||||| |||||||| || || || |||||||||||||| ||||| ||||||||||| ||||| ||||||||||| |  ||||| ||||| || ||||    
T  39955038 cgacgaatcgcaggcttggttatgccttggatgttgtcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccac 39955137  T
Q  302 gacct 306  Q
    |||||    
T  39955138 gacct 39955142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 279
Target Start/End: Complemental strand, 354547 - 354316
Alignment:
Q  49 acaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgaccgcatcacggatgacattctccaagaagatcttcaagacacctatgg 148  Q
    ||||||||||| || || |  ||||||||||| || ||||||||||| || || |||||||  ||  |||||| |||||| |||||||| || ||| |      
T  354547 acaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctctta 354448  T
Q  149 tttcttcatagatcaaa-ccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaa 247  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||| || ||||| || || || || |||||  |||  ||||    
T  354447 tttcctcatagattaaaaccactgatcctcttcacaccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaa 354348  T
Q  248 cttttctgtgcctttttgcacctccctttcct 279  Q
    | || || || |  ||||||||||||||||||    
T  354347 ccttgctatgtcactttgcacctccctttcct 354316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 10580829 - 10580760
Alignment:
Q  149 tttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggctt 218  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || |||||    
T  10580829 tttcctcatagatcaaaccactgatcctcttcacaccaactcttctcgccaatctacgaatcgctggctt 10580760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 14261024 - 14261329
Alignment:
Q  1 caacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtga 100  Q
    ||||||||||| ||||| |  || ||||| || |||||||| ||||| ||||||||||| || ||||| ||||||||||| || || ||||| || || |    
T  14261024 caacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaa 14261123  T
Q  101 ccgcatcacggatgacattctccaagaagatcttcaagacacctatggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaa 200  Q
    | ||||| |  || |||||||||||||| |||||||| |||||    ||||||||||| ||||| || ||||| ||||||||||| ||||||||||| ||    
T  14261124 cagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacctcctcttctcgctaa 14261223  T
Q  201 tcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcccttacca 300  Q
    ||| ||||| || ||||| ||||| || ||||||||||| || || ||||| |  || || |||||||||||||||||||  |||||||||||||| |||    
T  14261224 tcgccgaatcgctggctttgtgattccttggatgttgtcacgaagcactttgcgatgtctctttgcacctccctttcctaatcccttacctccctttcca 14261323  T
Q  301 cgacct 306  Q
    ||||||    
T  14261324 cgacct 14261329  T

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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 41027753 - 41027545
Alignment:
Q  10 aatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgaccgcatcac 109  Q
    |||||||| || || ||||| || |||||||| ||||| ||||||||||| || ||||| ||||| |||||||||||||| ||||| || || |||||||    
T  41027753 aatccataaagagtccttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcac 41027654  T
Q  110 ggatgacattctccaagaagatcttcaagacacctatggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaat 209  Q
    | || ||||||||||| ||||||||||| || ||    || ||||| ||||||||||| || || | |||||| || ||||| |  ||||| ||||||||    
T  41027653 gaataacattctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcactcctcctctacgtgccaaacgacgaat 41027554  T
Q  210 ggcaggctt 218  Q
     ||||||||    
T  41027553 cgcaggctt 41027545  T

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Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 25 - 293
Target Start/End: Complemental strand, 53328880 - 53328612
Alignment:
Q  25 cttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgaccgcatcacggatgacattctcca 124  Q
    |||||||||||||| | ||| || ||||||||||| || ||||| ||||| |  | ||| ||||| ||||||||||| |||||||| || |||||||| |    
T  53328880 cttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgacagcatcacgaatcacattctcaa 53328781  T
Q  125 agaagatcttcaagacacctatggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaatggcaggcttagtgat 224  Q
      |||||||| |  || ||    |||||||||||||| || |||||||| | |||||||||||| | ||| || |  |||||||| |||||||| |||||    
T  53328780 gaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtcttgcgagacgacgaatcgcaggctttgtgat 53328681  T
Q  225 accctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagccccttacctcc 293  Q
     ||||||||||| ||||| ||||| || | ||| | ||| || || ||||||||||  ||||| |||||    
T  53328680 tccctggatgttatcgcgcagaaccttacggtgtcgtttcgctccaccctttcctaaaccctttcctcc 53328612  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 22898734 - 22898505
Alignment:
Q  10 aatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgaccgcatcac 109  Q
    ||||| || |||||||||||||| ||||| |  ||||| || |||||||| || ||||| |||||||| ||||||||||||||||| || || ||||| |    
T  22898734 aatccgtaaagggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctc 22898635  T
Q  110 ggatgacattctccaagaagatcttcaagacacctatggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaat 209  Q
      || ||||||||||| || |||||||| || ||    || || ||||| |||||||||||||| | |||||| || ||||| |  || |  ||||||||    
T  22898634 taatcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaat 22898535  T
Q  210 ggcaggcttagtgataccctggatgttgtc 239  Q
     || ||||| || || ||||||||||||||    
T  22898534 cgctggctttgttattccctggatgttgtc 22898505  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 22950402 - 22950173
Alignment:
Q  10 aatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgaccgcatcac 109  Q
    ||||| || |||||||||||||| ||||| |  ||||| || |||||||| || ||||| |||||||| ||||||||||||||||| || || ||||| |    
T  22950402 aatccgtaaagggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctc 22950303  T
Q  110 ggatgacattctccaagaagatcttcaagacacctatggtttcttcatagatcaaaccactgatcctcttcacaccacctcttctcgccaatcgacgaat 209  Q
      || ||||||||||| || |||||||| || ||    || || ||||| |||||||||||||| | |||||| || ||||| |  || |  ||||||||    
T  22950302 taatcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcactcctcctctacgagcaagacgacgaat 22950203  T
Q  210 ggcaggcttagtgataccctggatgttgtc 239  Q
     || ||||| || || ||||||||||||||    
T  22950202 cgctggctttgttattccctggatgttgtc 22950173  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 26358552 - 26358712
Alignment:
Q  13 ccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgaccgcatcacgga 112  Q
    ||||| ||||| ||||| |||||||| |  ||||| ||||||||||| || |||||||| || |  | ||| || |||||||| ||||| |||||||| |    
T  26358552 ccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatcacgaa 26358651  T
Q  113 tgacattctccaagaagatcttcaagacacctatggtttcttcatagatcaaaccactgat 173  Q
    | |||||||| |  || ||||| |  |||||    |||||||||||||||| |||||||||    
T  26358652 taacattctcaagaaatatcttgagaacaccacgagtttcttcatagatcagaccactgat 26358712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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