View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_2D_low_33 (Length: 321)
Name: NF1264_2D_low_33
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_2D_low_33 |
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| [»] scaffold0707 (3 HSPs) |
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Alignment Details
Target: scaffold0707 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: scaffold0707
Description:
Target: scaffold0707; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 72 - 212
Target Start/End: Complemental strand, 6027 - 5883
Alignment:
| Q |
72 |
ttgatttattaagggnnnnnnngttactaaattaatcc----tagttttatttgtgcttaggcttttctgtaatatgcaagtgggaataaatactctttt |
167 |
Q |
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| T |
6027 |
ttgatttattaagggtttttttgttactaaattaatcccggctagttttatttgtgcttaggattttctgtaatatgcaagtgggaataaatactccttt |
5928 |
T |
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| Q |
168 |
gtgagaatcattttctggagtataattaatataacataaaaacaa |
212 |
Q |
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| T |
5927 |
gtgagaatcattttctagagtataattaatataacataaaaacaa |
5883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0707; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 218 - 309
Target Start/End: Complemental strand, 5705 - 5614
Alignment:
| Q |
218 |
attatagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggctgatgtcca |
309 |
Q |
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| T |
5705 |
attatagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggccgatgtcca |
5614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0707; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 6109 - 6058
Alignment:
| Q |
22 |
tattcctgctcacatccatctgttaatgaaattatgtttaacactgccactt |
73 |
Q |
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| T |
6109 |
tattcttgctcacatccatttgttaatgaaattatgtttaacactgccactt |
6058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 72 - 212
Target Start/End: Complemental strand, 33576819 - 33576675
Alignment:
| Q |
72 |
ttgatttattaagggnnnnnnngttactaaattaatcc----tagttttatttgtgcttaggcttttctgtaatatgcaagtgggaataaatactctttt |
167 |
Q |
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| T |
33576819 |
ttgatttattaagggtttttttgttactaaattaatcccggctagttttatttgtgcttaggattttctgtaatatgcaagtgggaataaatactccttt |
33576720 |
T |
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| Q |
168 |
gtgagaatcattttctggagtataattaatataacataaaaacaa |
212 |
Q |
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| T |
33576719 |
gtgagaatcattttctagagtataattaatataacataaaaacaa |
33576675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 218 - 309
Target Start/End: Complemental strand, 33576497 - 33576406
Alignment:
| Q |
218 |
attatagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggctgatgtcca |
309 |
Q |
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| T |
33576497 |
attatagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggccgatgtcca |
33576406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 240 - 300
Target Start/End: Original strand, 34861615 - 34861675
Alignment:
| Q |
240 |
aacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggc |
300 |
Q |
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| T |
34861615 |
aacagtagaagagaacttacttccaaggagtcggaactaagctttcaacgtaatccatggc |
34861675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 33576901 - 33576850
Alignment:
| Q |
22 |
tattcctgctcacatccatctgttaatgaaattatgtttaacactgccactt |
73 |
Q |
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| T |
33576901 |
tattcttgctcacatccatttgttaatgaaattatgtttaacactgccactt |
33576850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 5979390 - 5979311
Alignment:
| Q |
221 |
atagattcaaacaattgtaaacagttgaagagaacttacttccaaggagttggaactaagctttcaacgtattcaatggc |
300 |
Q |
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| T |
5979390 |
atagattcaaacaattgaaaatgatagaagagaacttacttccaatgagtcgaaaccaagctttcaatgtaatcaatggc |
5979311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 208
Target Start/End: Complemental strand, 36340632 - 36340541
Alignment:
| Q |
117 |
atttgtgcttaggcttttctgtaatatgcaagtgggaataaatactcttttgtgagaatcattttctggagtataattaatataacataaaa |
208 |
Q |
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| T |
36340632 |
atttgtgcttaactttttctgtaatatccaagatggaacaaatcctctttggtgagaatcatcttctgggatattattaatataaaataaaa |
36340541 |
T |
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