View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_2D_low_35 (Length: 320)
Name: NF1264_2D_low_35
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_2D_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 39406454 - 39406753
Alignment:
| Q |
20 |
tctctctcaccacttataagttttatcttcatctcctcattctctcccaccttctgcaataaaagctccaaaaca---acaacaatgattaagatctagc |
116 |
Q |
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| T |
39406454 |
tctctctcaccattt-taagttttatcttcatctcctcattctctcccaccttctgcaataaaacctccaaaacaacaacaacaatgattaaaatctagc |
39406552 |
T |
|
| Q |
117 |
ttccttgaggatgaagatcccaaaacaacaacaactatgaagatgtcgtaatttcgaatgagcaaaacttcatcactgagatcgaaaataaccacttcgt |
216 |
Q |
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| T |
39406553 |
ttccttgaggatgaaggtcccaaaacaacaatgactatgaagatgtcacaatttcgaacgagcaaagcttcatcactgagatcgaaaataaccactttgt |
39406652 |
T |
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| Q |
217 |
ggtggttacatcctacgccctgatgctgttacagtaatatcaggttgctagtgtatg-cgccgtcgccgccgagttgaaaagagatggtgtatagtataa |
315 |
Q |
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| T |
39406653 |
gatggttaaatcctacgccctgatgctatcacaataatgtcaggttgccggtgtacgccgcagtcgccgccgagttgaaaagagaccgtgtatagtataa |
39406752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 50430696 - 50430994
Alignment:
| Q |
20 |
tctctctcaccacttataagttttatcttcatctcctcattctctcccaccttctgcaataaaagctccaaaacaacaacaatgattaagatctagcttc |
119 |
Q |
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||||||||||||||| ||||||||||||||| |||||||||||||| || || |||||||||| |||||||||||||||| ||||||||| ||||||| |
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| T |
50430696 |
tctctctcaccacttttaagttttatcttcacttcctcattctctcctactttatgcaataaaacatccaaaacaacaacaacgattaagatttagcttc |
50430795 |
T |
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| Q |
120 |
cttgaggatgaagatcccaaaacaacaacaactatgaagatgtcgtaatttcgaatgagc--aaaacttcatcactgagatcgaaaataaccacttcgtg |
217 |
Q |
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| T |
50430796 |
tttgaggatcaagttcccaaaacaacaacgactatgaagatgtcgtaattttgaaggagcaaaaaacttcatcactgagatcgaaaataaccacttcgtg |
50430895 |
T |
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| Q |
218 |
gtggttacatcctac-gccctgatgctgttacagtaatatcaggttgctagtgtatg-cgccgtcgccgccgagttgaaaagagatggtgtatagtata |
314 |
Q |
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| |||| ||||||| |||||||| ||| ||||||| ||| |||| | ||||| | ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50430896 |
attgttaaatcctacacccctgatgttgtcacagtaacgtcaagttgtttgtgtacgccgccgtcgccgccgagttgaaaagagacggtgtatagtata |
50430994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 80 - 314
Target Start/End: Complemental strand, 21672584 - 21672349
Alignment:
| Q |
80 |
aaaagctccaaaacaacaacaatgattaagatctagcttccttgaggatgaagatcccaaaacaacaacaactatgaagatgtcgtaatttcgaatgagc |
179 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||| | ||||||||||| |||||||||||||||||| |
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| T |
21672584 |
aaaacctccaaaacaagaacaatgattaagatctagcttctttgaggttgaagatcccaaaacaacagcgactatgaagatatcgtaatttcgaatgagc |
21672485 |
T |
|
| Q |
180 |
aaaacttcatcactgagatcgaaaataaccacttcgtggtggttacatcctacgccctgatgctgttacagtaatatcaggttgctagtgtatg-cgccg |
278 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||| ||| |||||| ||||| ||| ||| ||| |||||||||| ||||||| ||||| |
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| T |
21672484 |
aaaacttcatcactgagatcgaaaataaccacttcatgatggttaaatcttacgccatgatgttgtcacaataacgtcaggttgctggtgtatgccgccg |
21672385 |
T |
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| Q |
279 |
tcgccgccgagttgaaaagagatggtgtatagtata |
314 |
Q |
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|| ||||||||||||||||||| |||||||||||| |
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| T |
21672384 |
tcaccgccgagttgaaaagagactgtgtatagtata |
21672349 |
T |
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