View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_2D_low_37 (Length: 309)
Name: NF1264_2D_low_37
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_2D_low_37 |
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| [»] scaffold0112 (1 HSPs) |
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| [»] scaffold0093 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 15617255 - 15616962
Alignment:
| Q |
1 |
cacacacaatatgtaagtacttttaacaaaatataaaccattcttcctggatttcaatattaacctatcatccaccacctgatcgagtaacaatgttcga |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15617255 |
cacacacaatatgtaagtacttttaacagaatataaaccattcttctcggatttcaatattaacctatcatccaccacctgatcgagtaacaatgttcga |
15617156 |
T |
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| Q |
101 |
cgaaaagattcggctgtattgaaactaaacacttgttgaatcacttcctcattccagccattcgacgaggaattcatcaaactattcatatgaaaatccc |
200 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15617155 |
agaaaaaattcagctgtattgaaactaaacacttgttgaatcacttcctcattctagccattcgacgaggaattcatcagactattcatatgaaaatccc |
15617056 |
T |
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| Q |
201 |
tcacaaagtttacccccacaatatttccatctatgtgatcctcattcactaaccatggttcatcaagtatagatatagagtgatccgtactgat |
294 |
Q |
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| T |
15617055 |
tcacaaagtttacccccacaatatttccatctatgtcatcctcattcactaaccatggttcatcaagtatagatatagagtgacccgtactgat |
15616962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 283
Target Start/End: Complemental strand, 16042920 - 16042836
Alignment:
| Q |
193 |
aaaatccctcacaaagtttacccccacaatatttccatctatgtgatcctcattcactaaccatggttcatcaagtatagatatagagtga |
283 |
Q |
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| T |
16042920 |
aaaatccctcacaaagttttcacccataatatttccatccatgtgatccccattta------atggttcataaagtattgatatagagtga |
16042836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 43219097 - 43219386
Alignment:
| Q |
1 |
cacacacaatatgtaagtacttttaacaaaatataaaccattcttcctggatttcaatattaacctatcatccaccacctgatcgagtaacaatgttcga |
100 |
Q |
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|||||||||| |||||| | | || || ||||||||||||| ||| | |||| | ||||| || ||||||||||||||||| |||||| ||||||| |
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| T |
43219097 |
cacacacaatctgtaagcaatcttgacggaatataaaccatttttctcagctttccagattaatctgtcatccaccacctgatcaagtaaccttgttcga |
43219196 |
T |
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| Q |
101 |
cgaaaagattcggctgtattgaaactaaacacttgttgaatcacttcctcattccagccattcgacgaggaattcatcaaactattcatatgaaaatccc |
200 |
Q |
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| T |
43219197 |
ataatagagtcggctatatcaggactaaacacttgttgaataacttcctggttccaacccttcgtcgagacatgcatcagactactcccataaaaatccc |
43219296 |
T |
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| Q |
201 |
tcacaaagtttacccccacaatatttccatctatgtgatcctcattcactaaccatggttcatcaagtatagatatagagtgatccgtac |
290 |
Q |
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| T |
43219297 |
tcacaaagtttgcacccataatatttccatcaatgcggtccccattcaacaaccaaggttcatcaagtattgatatagagtgacccgtac |
43219386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 33593 - 33474
Alignment:
| Q |
30 |
aatataaaccattcttcctggatttcaatattaacctatcatccaccacctgatcgagtaacaatgttcgacgaaaagattcggctgtattgaaactaaa |
129 |
Q |
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||||||||||||||||| | |||| |||||||||||||||||||||||||||| |||||| ||||| || ||| |||||||||| ||| ||||| | |
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| T |
33593 |
aatataaaccattcttctcagctttccatattaacctatcatccaccacctgatcaagtaacgatgtttgaagaatagattcggctatatcagaactata |
33494 |
T |
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| Q |
130 |
cacttgttgaatcacttcct |
149 |
Q |
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| T |
33493 |
aacttgttgaattacttcct |
33474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 30 - 165
Target Start/End: Original strand, 17400 - 17535
Alignment:
| Q |
30 |
aatataaaccattcttcctggatttcaatattaacctatcatccaccacctgatcgagtaacaatgttcgacgaaaagattcggctgtattgaaactaaa |
129 |
Q |
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||||||||||||| ||| | |||| |||||||||||||||||||||||||||| |||||| |||||||| ||| |||||||| | ||| ||||||| |
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| T |
17400 |
aatataaaccattattctcagctttccatattaacctatcatccaccacctgatcaagtaacgatgttcgaagaatagattcggttatatcagaactaaa |
17499 |
T |
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| Q |
130 |
cacttgttgaatcacttcctcattccagccattcga |
165 |
Q |
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| T |
17500 |
accttgttgaattacttcctagttccagcctttcga |
17535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 283
Target Start/End: Complemental strand, 4609010 - 4608920
Alignment:
| Q |
193 |
aaaatccctcacaaagtttacccccacaatatttccatctatgtgatcctcattcactaaccatggttcatcaagtatagatatagagtga |
283 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||| | ||| |||||| ||||||| |||| ||||||||||||||||||| |
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| T |
4609010 |
aaaatccctcacaaagtttttccccacactatttccatctatgcggtccccattcaaaaaccatgactcatgaagtatagatatagagtga |
4608920 |
T |
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