View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1264_2D_low_40 (Length: 306)
Name: NF1264_2D_low_40
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_2D_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 3 - 291
Target Start/End: Original strand, 15617285 - 15617570
Alignment:
| Q |
3 |
acgatcgggatattggtatgatatttagagactgaaagtgcctccaaaagtaaagaatttgatctataaaacgtatcgtggggtgcttaccaaaccaagt |
102 |
Q |
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| T |
15617285 |
acgatcgagatattggtatgatatttagagactgaaagtgcctccaaaagtaaagaatttgatctggaaaacgtatcgtggg-tgcttaccaaaccaagt |
15617383 |
T |
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| Q |
103 |
atggttttaagataaaggagtaaaatattccccaagttgtgtcaatatattgtggtggtcttcatgaggatcttgctcatatttttgtttcgaaattcga |
202 |
Q |
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| T |
15617384 |
atggttttaagataaaggagtgaaatattccccaagttgtgtcaatatattgtggtggtcttcatgaggatcttgctcata--tttgtttcgaaattcga |
15617481 |
T |
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| Q |
203 |
gtgtcctttaactatgcaagtttggcgcagggctcgtctttggaatgtggttaacgaagcgtttctcgaaaagaattcagtagttgatg |
291 |
Q |
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| T |
15617482 |
gtgtcctttaactatgcaggtttggcgtagggctcgtctttggaatgtggttaacgaagcgtttctcgaaaagaattcagtagttgatg |
15617570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 291
Target Start/End: Complemental strand, 43218883 - 43218793
Alignment:
| Q |
201 |
gagtgtcctttaactatgcaagtttggcgcagggctcgtctttggaatgtggttaacgaagcgtttctcgaaaagaattcagtagttgatg |
291 |
Q |
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| T |
43218883 |
gagtgtccttttactgtgcaggtttggcgtaagattggcctttggaatgtggttcatgaggtgtttctcgaaaagaattcagcagttgatg |
43218793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 291
Target Start/End: Original strand, 20250736 - 20250826
Alignment:
| Q |
201 |
gagtgtcctttaactatgcaagtttggcgcagggctcgtctttggaatgtggttaacgaagcgtttctcgaaaagaattcagtagttgatg |
291 |
Q |
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| T |
20250736 |
gagtgtccttttactgtgcaggtttggcgtaagattggcctttggaatgtggttcatgaggtgtttctcaaaaagaattcagcagttgatg |
20250826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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