View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1264_2D_low_45 (Length: 252)

Name: NF1264_2D_low_45
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1264_2D_low_45
NF1264_2D_low_45
[»] chr3 (17 HSPs)
chr3 (1-233)||(23467677-23467909)
chr3 (1-211)||(23400949-23401159)
chr3 (1-115)||(23462007-23462121)
chr3 (1-115)||(23382244-23382358)
chr3 (18-116)||(36001223-36001321)
chr3 (30-115)||(23350714-23350799)
chr3 (60-115)||(23438640-23438695)
chr3 (137-212)||(23446172-23446247)
chr3 (1-115)||(23471120-23471234)
chr3 (131-212)||(23497915-23497996)
chr3 (18-114)||(23403420-23403516)
chr3 (64-116)||(23446045-23446097)
chr3 (18-121)||(23477305-23477408)
chr3 (62-116)||(23434171-23434225)
chr3 (131-207)||(23477466-23477542)
chr3 (182-211)||(23403623-23403652)
chr3 (64-116)||(23497782-23497834)
[»] scaffold0201 (1 HSPs)
scaffold0201 (18-115)||(10196-10293)
[»] chr4 (1 HSPs)
chr4 (65-116)||(12898192-12898243)
[»] chr2 (1 HSPs)
chr2 (65-97)||(16120403-16120435)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 23467677 - 23467909
Alignment:
Q  1 catggtggtaaacattaaagcccacagaaagaatgatgcaaaatataaaactgcacaaatcagattttggaataggaggaataattattgaagcctctat 100  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23467677 catggtggtaaacattaaagccctcagaaagaatgatggaaaatataaaactgcacaaatcagattttggaataggaggaataattattgaagcctctat 23467776  T
Q  101 tgtctgaaaatcaaacatgcatgcaatggagtcttcagagaaggtttgtaacatgttattaaaaaatgacggttgaatggagtatgtgtccagataagtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23467777 tgtctgaaaatcaaacatgcatgcaatggagtcttcagagaaggtttgtaacatgttattaaaaaatgacggttgaatggagtatgtgtccagataactg 23467876  T
Q  201 caattaacggcagggatggtggaagctctgtta 233  Q
    |||||||||||||||||||||||||||||||||    
T  23467877 caattaacggcagggatggtggaagctctgtta 23467909  T

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Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 23400949 - 23401159
Alignment:
Q  1 catggtggtaaacattaaagcccacagaaagaatgatgcaaaatataaaactgcacaaatcagattttggaataggaggaataattattgaagcctctat 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23400949 catggtggtaaacattaaagccctcagaaagaatgatgcaaaatataaaactgcaccaatcagattttggaataggaggaataattattgaagcctctat 23401048  T
Q  101 tgtctgaaaatcaaacatgcatgcaatggagtcttcagagaaggtttgtaacatgttattaaaaaatgacggttgaatggagtatgtgtccagataagtg 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23401049 tgtctgaaaatcaaagatgcatgcaatggagtcttcagagaaggtttgtaacatgttattaaaaaatgacggttgaatggagtatgtgtccatataagtg 23401148  T
Q  201 caattaacggc 211  Q
    |||||||||||    
T  23401149 caattaacggc 23401159  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 23462007 - 23462121
Alignment:
Q  1 catggtggtaaacattaaagcccacagaaagaatgatgcaaaatataaaactgcacaaatcagattttggaataggaggaataattattgaagcctctat 100  Q
    ||||||||| |||| | |||||| |||||| || |||||||||||| ||||  ||||| |||||||| | ||||||| ||||| ||||||||||||  ||    
T  23462007 catggtggttaacagtgaagccctcagaaaaaaggatgcaaaatatgaaaccacacaagtcagatttagcaataggaagaatagttattgaagccttgat 23462106  T
Q  101 tgtctgaaaatcaaa 115  Q
    |||||||||||||||    
T  23462107 tgtctgaaaatcaaa 23462121  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 23382244 - 23382358
Alignment:
Q  1 catggtggtaaacattaaagcccacagaaagaatgatgcaaaatataaaactgcacaaatcagattttggaataggaggaataattattgaagcctctat 100  Q
    |||||| || |||| | |||||| |||||| || |||||||||||| ||||  ||||| |||||||| | ||||||| ||||| ||||||||||||  ||    
T  23382244 catggttgttaacagtgaagccctcagaaaaaaggatgcaaaatatgaaaccacacaagtcagatttagcaataggaagaatacttattgaagccttgat 23382343  T
Q  101 tgtctgaaaatcaaa 115  Q
    |||||||||||||||    
T  23382344 tgtctgaaaatcaaa 23382358  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 36001223 - 36001321
Alignment:
Q  18 aagcccacagaaagaatgatgcaaaatataaaactgcacaaatcagattttggaataggaggaataattattgaagcctctattgtctgaaaatcaaac 116  Q
    |||||| |||| | |||||||||||| || ||||  ||||||||||||||||||||||||||||||| ||| || |||||| |||  ||||||| ||||    
T  36001223 aagccctcagagaaaatgatgcaaaaaattaaacaacacaaatcagattttggaataggaggaataactatcgaggcctctgttgattgaaaataaaac 36001321  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 23350714 - 23350799
Alignment:
Q  30 agaatgatgcaaaatataaaactgcacaaatcagattttggaataggaggaataattattgaagcctctattgtctgaaaatcaaa 115  Q
    |||| |||||| ||||| ||||  ||||| | |||||||||||| ||||||||| ||||||||||||||| ||||| |||||||||    
T  23350714 agaacgatgcagaatatgaaaccacacaagtaagattttggaattggaggaatacttattgaagcctctactgtcttaaaatcaaa 23350799  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 23438640 - 23438695
Alignment:
Q  60 tcagattttggaataggaggaataattattgaagcctctattgtctgaaaatcaaa 115  Q
    |||||||||||||||||| ||||| |||||||||||||  ||||||||||||||||    
T  23438640 tcagattttggaataggaagaatagttattgaagcctcagttgtctgaaaatcaaa 23438695  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 23446172 - 23446247
Alignment:
Q  137 agagaaggtttgtaacatgttattaaaaaatgacggttgaatggagtatgtgtccagataagtgcaattaacggca 212  Q
    ||||||| |||||| |||||| | || ||||||| ||||| |||||| ||||||||||||||||||||||| ||||    
T  23446172 agagaagatttgtaccatgttctcaagaaatgaccgttgagtggagtctgtgtccagataagtgcaattaatggca 23446247  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 23471120 - 23471234
Alignment:
Q  1 catggtggtaaacattaaagcccacagaaagaatgatgcaaaatataaaactgcacaaatcagattttggaataggaggaataattattgaagcctctat 100  Q
    ||||||||| || | | |||||| |||||| || ||||| |||||| ||||  || ||  ||||||||  ||||||| ||||| ||||||||||||| ||    
T  23471120 catggtggttaatagtgaagccctcagaaaaaaggatgcgaaatatgaaaccacataagacagattttttaataggaagaatagttattgaagcctcgat 23471219  T
Q  101 tgtctgaaaatcaaa 115  Q
    |||||||||||||||    
T  23471220 tgtctgaaaatcaaa 23471234  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 212
Target Start/End: Original strand, 23497915 - 23497996
Alignment:
Q  131 gtcttcagagaaggtttgtaacatgttattaaaaaatgacggttgaatggagtatgtgtccagataagtgcaattaacggca 212  Q
    ||||| ||||||| ||||||  ||||| | || ||||||| ||||| |||||| ||||||||||||||||||||||| ||||    
T  23497915 gtctttagagaagatttgtactatgttctcaagaaatgaccgttgagtggagtctgtgtccagataagtgcaattaatggca 23497996  T

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Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 23403420 - 23403516
Alignment:
Q  18 aagcccacagaaagaatgatgcaaaatataaaactgcacaaatcagattttggaataggaggaataattattgaagcctctattgtctgaaaatcaa 114  Q
    |||||| |||||| || |||||||||||| ||||  | |||  ||||||| | ||||||| ||||| ||||||||||||| |||||||| |||||||    
T  23403420 aagccctcagaaaaaaggatgcaaaatatgaaaccacgcaagacagatttagtaataggaagaatagttattgaagcctcgattgtctgcaaatcaa 23403516  T

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Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 23446045 - 23446097
Alignment:
Q  64 attttggaataggaggaataattattgaagcctctattgtctgaaaatcaaac 116  Q
    |||||||||||||||||||  |||||||||||| |||||| ||||||||||||    
T  23446045 attttggaataggaggaatggttattgaagcctttattgtttgaaaatcaaac 23446097  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 23477305 - 23477408
Alignment:
Q  18 aagcccacagaaagaatgatgcaaaatataaaactgcacaaatcagattttggaataggaggaataattattgaagcctctattgtctgaaaatcaaaca 117  Q
    |||||| ||||||||||| |||| ||||| ||||   |||  | | |||||||||||||||||||  ||||||||||||  ||||| ||||||||||||     
T  23477305 aagccctcagaaagaatggtgcagaatatgaaaccagacaggttatattttggaataggaggaatggttattgaagccttcattgtttgaaaatcaaact 23477404  T
Q  118 tgca 121  Q
    ||||    
T  23477405 tgca 23477408  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 23434171 - 23434225
Alignment:
Q  62 agattttggaataggaggaataattattgaagcctctattgtctgaaaatcaaac 116  Q
    |||||||||||||||||||||  |||||||||||| | |||| ||||||||||||    
T  23434171 agattttggaataggaggaatggttattgaagcctttgttgtttgaaaatcaaac 23434225  T

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Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 23477466 - 23477542
Alignment:
Q  131 gtcttcagagaaggtttgtaacatgttattaaaaaatgacggttgaatggagtatgtgtccagataagtgcaattaa 207  Q
    ||||| ||||||  |||||| |||||| | || ||||||| ||||| |||||| ||| |||||||||||||||||||    
T  23477466 gtctttagagaaaatttgtaccatgttctcaagaaatgaccgttgagtggagtctgtatccagataagtgcaattaa 23477542  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 211
Target Start/End: Original strand, 23403623 - 23403652
Alignment:
Q  182 gtatgtgtccagataagtgcaattaacggc 211  Q
    ||||||||||||||||||||||||||||||    
T  23403623 gtatgtgtccagataagtgcaattaacggc 23403652  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 23497782 - 23497834
Alignment:
Q  64 attttggaataggaggaataattattgaagcctctattgtctgaaaatcaaac 116  Q
    |||||||||| ||||||||  ||||||||||||  ||||| ||||||||||||    
T  23497782 attttggaatcggaggaatggttattgaagccttcattgtttgaaaatcaaac 23497834  T

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Target: scaffold0201 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 10196 - 10293
Alignment:
Q  18 aagcccacagaaagaatgatgcaaaatataaaactgcacaaatcagattttggaataggaggaataattattgaagcctctattgtctgaaaatcaaa 115  Q
    |||||| |||||||||||||||||||||| ||||  ||||| |||||||||| ||||||| |||||  |||||||||| | |||||||||||||||||    
T  10196 aagccctcagaaagaatgatgcaaaatatgaaaccacacaagtcagattttgtaataggaagaatagatattgaagccccgattgtctgaaaatcaaa 10293  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 116
Target Start/End: Complemental strand, 12898243 - 12898192
Alignment:
Q  65 ttttggaataggaggaataattattgaagcctctattgtctgaaaatcaaac 116  Q
    |||||||||||||||||||| |||||| ||||||||||| ||||||||||||    
T  12898243 ttttggaataggaggaataactattgacgcctctattgtttgaaaatcaaac 12898192  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 16120403 - 16120435
Alignment:
Q  65 ttttggaataggaggaataattattgaagcctc 97  Q
    ||||||||||||||||||||| |||||||||||    
T  16120403 ttttggaataggaggaataatgattgaagcctc 16120435  T

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