View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1264_2D_low_47 (Length: 238)
Name: NF1264_2D_low_47
Description: NF1264_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1264_2D_low_47 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 51058 - 51278
Alignment:
| Q |
1 |
aaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgacattttagaccctttaacacttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
51058 |
aaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgacattttagactctttaacacttct |
51157 |
T |
|
| Q |
101 |
tcgccccctaattgggttgaatacannnnnnnnccatctctttagctttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtatt |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51158 |
tcgccccctaattgggttgaataca-tttttttccatctctttagctttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtatt |
51256 |
T |
|
| Q |
201 |
atactatatcctctatgtgatg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
51257 |
atactatatcctctatgtgatg |
51278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6893 - 6675
Alignment:
| Q |
1 |
aaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgacattttagaccctttaacacttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6893 |
aaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacacttct |
6794 |
T |
|
| Q |
101 |
tcgccccctaattgggttgaatacannnnnnnnccatctctttagc-tttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtat |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6793 |
---ccccctaattgggttgaataca-tttttttccatctctttagcttttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtat |
6698 |
T |
|
| Q |
200 |
tatactatatcctctatgtgatg |
222 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
6697 |
tatactatatcctctatgtgatg |
6675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 16806 - 16588
Alignment:
| Q |
1 |
aaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgacattttagaccctttaacacttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
16806 |
aaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacacttct |
16707 |
T |
|
| Q |
101 |
tcgccccctaattgggttgaatacannnnnnnnccatctctttagc-tttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtat |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16706 |
---ccccctaattgggttgaataca-tttttttccatctctttagcttttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtat |
16611 |
T |
|
| Q |
200 |
tatactatatcctctatgtgatg |
222 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
16610 |
tatactatatcctctatgtgatg |
16588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 22176 - 22394
Alignment:
| Q |
1 |
aaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgacattttagaccctttaacacttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
22176 |
aaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacacttct |
22275 |
T |
|
| Q |
101 |
tcgccccctaattgggttgaatacannnnnnnnccatctctttagc-tttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtat |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22276 |
---ccccctaattgggttgaataca-tttttttccatctctttagcttttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtat |
22371 |
T |
|
| Q |
200 |
tatactatatcctctatgtgatg |
222 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
22372 |
tatactatatcctctatgtgatg |
22394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 15709049 - 15708831
Alignment:
| Q |
1 |
aaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgacattttagaccctttaacacttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15709049 |
aaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacacttct |
15708950 |
T |
|
| Q |
101 |
tcgccccctaattgggttgaatacannnnnnnnccatctctttagc-tttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtat |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
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| T |
15708949 |
---ccccctaattgggttgaataca-tttttttccatctctttagcttttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtat |
15708854 |
T |
|
| Q |
200 |
tatactatatcctctatgtgatg |
222 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
15708853 |
tatactatatcctctatgtgatg |
15708831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 26795745 - 26795969
Alignment:
| Q |
1 |
aaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgacattttagaccctttaacacttct |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26795745 |
aaaacctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgacattttggaccctttaacacttct |
26795844 |
T |
|
| Q |
101 |
tcgccccctaattgggttgaatacannnnnnnnccatctctttagc-tttaaactaaagatcatccttttatgagttt----ccttttggtcgtagggtg |
195 |
Q |
| |
|
|| |||||||||| ||||||| || ||||| ||||||| ||| |||||||||||||| |||||| ||||| ||||||||| |||| ||| |
|
|
| T |
26795845 |
tcttcccctaattgtgttgaatgca--tcttttccatccctttagctttttaactaaagatcatctttttattagtttacaaccttttggttgtagagtg |
26795942 |
T |
|
| Q |
196 |
gtattatactatatcctctatgtgatg |
222 |
Q |
| |
|
||| ||||||||| |||||||||||| |
|
|
| T |
26795943 |
gtaccatactatatactctatgtgatg |
26795969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3381112 - 3380895
Alignment:
| Q |
1 |
aaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgacattttagaccctttaacacttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3381112 |
aaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgacattttagtccctttaacacttct |
3381013 |
T |
|
| Q |
101 |
tcgccccctaattgggttgaatacannnnnnnnccatctctttagc-tttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtat |
199 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3381012 |
----cccctaattgggttgaataca-tttttttccatctctttagcttttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggtat |
3380918 |
T |
|
| Q |
200 |
tatactatatcctctatgtgatg |
222 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3380917 |
tatactatatcctctatgtgatg |
3380895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 44498510 - 44498316
Alignment:
| Q |
1 |
aaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttgacattttagaccctttaacacttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44498510 |
aaaatctttgtttttgcagcaacttctgcaccttgagtatgcacaatccttctttgcttggttcccacagtcttaacattttagaccctttaacacttct |
44498411 |
T |
|
| Q |
101 |
tcgccccctaattgggttgaatacannnnnnnnccatctctttagc-tttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggta |
198 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44498410 |
---ccccctagttgggttgaataca-tttttttccatctctttagcttttaaactaaagatcatccttttatgagtttccttttggtcgtagggtggta |
44498316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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